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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggggaagattttgtatggtgtaaagattgtcacaattgcaatgtatcagctattggtttgttatttttctatttaaatttatattgtcctctggatgtccttgcagTCTGCCATTGGTTCTATAGCTTCTGCTGCAGAGCAAGCATTCATTCCTTATGCCGAAAGGGTTTTAGAGTTGATGAAAAGTTTCATGGTGTTAACTAATG

Basic information

species Glycine max
transcript GLYMA15G05090.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05090.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G27640.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatggggaagattttgtatggtgtaaagattgtcacaattgcaatgtatcagctattggtttgttatttttctatttaaatttatattgtcctctggatgtccttgcagTCTGCCATTGGTTCTATAGCTTCTGCTGCAGAGCAAGCATTCATTCCTTATGCCGAAAGGGTTTTAGAGTTGATGAAAAGTTTCATGGTGTTAACTAATG
                   |    | |  ||  |  | |  |     | | | ||  || | | | |  | |  ||||||       | || ||    |  | |||||||||||| ||||| ||  | ||| ||||||||||||||||||||| ||| || || || |||||| |||||||||||||   |||||||||| | || || |
------------------gtaaactgacaatctttgccagagtttcttttgaactggtg-tatctgaaatattgatttaa----gcgtcgtgct----acttgcttgcagTCTGCAATTGGGTCGGTTGCTGCTGCTGCAGAGCAAGCATTCAATCCATACGCTGAGAGGGTTCTAGAGTTGATGAAGTTTTTCATGGTGCTCACCAAAG

upper sequence: GLYMA15G05090.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 3'ss of exon 7
gtatgggga-agattttgtatggtgtaaagattgtcacaattgcaatgtatcagctattggtttgttatttttctatttaaatttatattgtcctctggatgtccttgcagTCTGCCATTGGTTCTATAGCTTCTGCTGCAGAGCAAGCATTCATTCCTTATGCCGAAAGGGTTTTAGAGTTGATGAAAAGTTTCATGGTGTTAACTAATG
||||   || |  |||  | |  |  ||| |     |||  |    |   | |  | |    || | |||||  |    |  || | |||   |||    |||  ||||||||||| ||||||||  | ||  |||||||||||||||||||  |||| ||||| ||||||||| | ||||||||||||| |||||||||| | || ||||
gtataaagatatctttccttttctccaaaaacctctaca--taatttagtttaaatgtcaaatt-tgattttatttaccatgttaagatt--tctcctactgttattgcagTCTGCAATTGGTTCAGTTGCGGCTGCTGCAGAGCAAGCATTTGTTCCATATGCTGAAAGGGTTCTGGAGTTGATGAAAAATTTCATGGTGCTTACCAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggtttgttatttttctatttaaatttatattgtcctctggatgtccttgcagTCTGCCATTGGTTCTATAGCTTCTGCTGCAGAGCAAGCATTCATTCCTTATGCCGAAAGGGTTTTAGAGTTGATGAAAAGTTTCATGGTGTTAACTAATG
                                            tgtcctt  CT-rich tract
     tttgttatttttctat  TA-rich tract