Sequence
atgc intronic sequence ATGC exonic sequence...tttcttagcgtacaaaggatatatagctatttaacgtgaagatcaataatgttgcgattattattccacttgctattgaagatttctctgttcaacccagGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGACCAGAAG
Basic information
species | Glycine max |
transcript | GLYMA15G04850.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G04850.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G001457_T02 (Zea mays), 3'ss of exon 7
tttcttagcgtacaaaggatatatagctattta-acgtgaagatcaataatgttgcgattattattccacttgctattgaagatttctctgttcaacc----cagGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGACCAGAAG
||| |||| | |||| | | | | ||| || | | | | || | | | || ||| | | ||| || ||| ||||| ||||||||||| ||||| ||||| ||||||||||| ||||||
----ctagttgcttgtagataga-ggctactaatgtgcagatatctttatttctatggtaatgagttaaactgaaatttcttgtggttgtgtatcacttgagtagGTAAGAAATTCTGGAACCTCTTTCACTTGCAGCCTATGCGTGATCAGAAG
upper sequence: GLYMA15G04850.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G45780.1 (Arabidopsis thaliana), 3'ss of exon 8
tttcttagcgtacaaaggatatatagctattt-aacgtgaagatcaataatgttgcgattattat-tccacttgctattgaagatttctctgttcaacccagGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGACCAGAAG
|| | ||| | | | | |||| | |||| ||| | | | || | | | ||| | | |||||||||||||||||||| | || || ||||||||||||||||| ||||||
------------------gtactcgattttttcgatattcttag-attaatctgtcgatcattgtataaagttttaaatttacattatattctctgtggcagGAAAGAAGTTCTGGAACATTTTCCACTTGCAACCTATGCGTGATCAGAAG
upper sequence: GLYMA15G04850.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 8
-tttcttagcgtacaaaggatatatagctatttaacgtgaagatcaataatgttgcgattattattccacttgctattgaagatttctctgttcaacccagGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGACCAGAAG
| | | | | | | | ||| ||| ||| | || |||| || | | | | | | | ||||| | | | | ||||| |||||||||||||||||||| ||| |||| ||||||||||| ||||||
gtgtttctacttggagaaaacataataacatt-aacagggttttctttaattttaatactgtcacttccataactattttaagtctgttgaaatcgtccagGGAAGAAGTTCTGGAACCTGTTCCATCTGCAGCCTATGCGTGATCAGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataatgttgcgattattattccacttgctattgaagatttctctgttcaacccagGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGACCAGAAG
tttctctgttc CT-rich tract
attattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttcttagcgtacaaaggatatatagctatttaacgtgaagatcaataatgttgcgattattattccacttgctattgaagatttctctgttcaacccagGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGACCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT