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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgggatattttcttaaacaataatttcaactgctgccattagttggtcttaattagtttgaattttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG

Basic information

species Glycine max
transcript GLYMA15G04500.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04500.2 (Glycine max), 3'ss of exon 7
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 3'ss of exon 5
------gttgggatattttcttaaacaataatttcaactgctgccattagttggtcttaattagtttgaattttattgg-cagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG
           ||||   ||||    | || || |  ||| ||   || |    | | | | | ||    || ||  || ||||||| ||||||| ||||| || ||||||||||| ||||||||  | |||||||| ||||| || |||||||| ||||| ||||| ||||
gtttgcaaaatgataccctctttt-tattacttacttctgttgatcttcgcctttgtgactaacttactcttctaccggacagGATTTTGCTTACCTCAACCTCGGAGGTATATGGAGATCCTCTCATTCATCCCCAGCCTGAGAGCTATTGGGGAAATGTCAACCCAATTG

upper sequence: GLYMA15G04500.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 3'ss of exon 6
-gttgggatattttcttaaacaataatttcaactgctgccattagttggtc--ttaattagtttgaatt--ttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG
  ||||||| |    | |    ||   || |||      ||| | ||  ||  || ||||  ||   ||  |  ||  ||||||  ||||||||||||||||||| |||||||| |||||||||| |||||||||| |||| || |||||||| ||||||||||| || |
gtttgggatttgacttcattttattcctttaaccaggatcataaatttctcaatttattaaattatgttaatgtttaacagGATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611728|gb|DB962965.1|DB962965
EST:     GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAG                         GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAGgttgggatat ... ttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|8827206|gb|BE210936.1|BE210936
EST:     GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTANGAGCAAG                         GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAGgttgggatat ... ttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|151412093|gb|EV281905.1|EV281905
EST:     GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAG                         GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAGgttgggatat ... ttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|192316740|gb|FK006443.1|FK006443
EST:     GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAG                         GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAGgttgggatat ... ttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|213591579|gb|DB955787.1|DB955787
EST:     GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAG                         GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAGgttgggatat ... ttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|192316741|gb|FK006444.1|FK006444
EST:     GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAG                         GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAGgttgggatat ... ttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|16279667|gb|BI943554.1|BI943554
EST:     GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAG                         GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAGgttgggatat ... ttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|192317198|gb|FK007909.1|FK007909
EST:     GTGTTTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAG                         GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAGgttgggatat ... ttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|19453064|gb|BM954474.1|BM954474
EST:     GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAG                         GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAGgttgggatat ... ttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|192296657|gb|FG991225.1|FG991225
EST:     GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAG                         GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTCGCTAAGCGAGTAGGAGCAAGgttgggatat ... ttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatttcaactgctgccattagttggtcttaattagtttgaattttattggcagGATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG
                           tcttaat  putative branch site (score: 3)
                                           ttttatt  putative PPT
                           tcttaattagtttgaa  TA-rich tract