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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgaagtttgaaaatgattttaaatattttgtatatctctctgaagtttaataatcaaaacatgcttttatttagAGAAATGGAGGAGATAACTGCATTCATCAATGGTGCTCTTTCTGACAATCAATGTCTGGGACGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAG

Basic information

species Glycine max
transcript GLYMA15G03900.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03900.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 3'ss of exon 5
gtatgttgaag----tttgaaaatgattttaaatattttgtatatctctctgaagtttaataatcaaaacatgcttttatttagAGAAATGGAGGAGATAACTGCATTCATCAATGGTGCTCTTTCTGACAATCAATGTCTGGGACGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAG
|||||||        |||| |  |  ||| ||  | ||| |       | || |   |  |  | |    | |  |    | |||||||||||||||||| |||||||  | || | |||  |||   |  |||||||||| ||||| ||||| || ||||||||||| || || |||||||||
gtatgttagtacatttttgcagcttgtttcaaccactttct-------tttgcaaactgcttttgagttgaagtctcatgtcagAGAAATGGAGGAGATATCTGCATTTGTGAAGGATGCAATTTGCAATGATCAATGTCTAGGACGCTGCCTTTATATTCATGGTGTACCAGGCACTGGCAAG

upper sequence: GLYMA15G03900.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g02050.t01 (Vitis vinifera), 3'ss of exon 6
gtatgttgaagtttgaaaatgattttaaatattttgtatatct---ctctgaagtttaataatcaaaacatgcttttatttagAGAAATGGAGGAGATAACTGCATTCATCAATGGTGCTCTTTCTGACAATCAATGTCTGGGACGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAG
|||||| ||   |||||     ||||| |  ||   | | | |   | ||    | |||||    | |   |||||||| ||| |||||||| |||||||||||||| || || |||||  | |   |  |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||
gtatgt-gagacttgaat----ttttataggttccatttttttgcgcactagtttctaatagaggacatgggcttttatgtagGGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTTTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAG

upper sequence: GLYMA15G03900.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g00530.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttgaagtttgaaaatgattttaaatattttgtatatct---ctctgaagtttaataatcaaaacatgcttttatttagAGAAATGGAGGAGATAACTGCATTCATCAATGGTGCTCTTTCTGACAATCAATGTCTGGGACGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAG
|||||| ||    ||||     ||||| |  ||   | | | |   | ||    | |||||    | |   |||||||| ||| |||||||| |||||||||||||| || || |||||  | |   |  |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
gtatgt-gagacctgaat----ttttataggttccatttttttgcgcactagtttctaatagaggacatgggcttttatgtagGGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTCTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatattttgtatatctctctgaagtttaataatcaaaacatgcttttatttagAGAAATGGAGGAGATAACTGCATTCATCAATGGTGCTCTTTCTGACAATCAATGTCTGGGACGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAG
                         gtttaat  putative branch site (score: 4)
                                            cttttattt  putative PPT
                          tttaataatcaaaaca  TA-rich tract