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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaataaatagactaggtttgagtgctgatattcagtttgctataactttgtatttgttttaatgatctactgacaaactaacttgatgataacatatgctctaaaagtttggtagatataataattttcactatttaaatttgtactcacaagattaagttatttatgcagGAAGTTAGAAGGCGTGGCTTGAAAGTTGCAGTGGTCGGAATTCCAAAAACTATTGACAATGATATCCCA

Basic information

species Glycine max
transcript GLYMA15G02400.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283061|gb|BE020622.1|BE020622
EST:     GTATGAAGCAGCTATGATTTTTGAG                         GAAGTTAGAAGGCGTGGCTTGAAAGTTGCAGTGGTCGGAATTCCAAAAACT
genomic: GTATGAAGCAGCTATGATTTTTGAGgtaattaata ... atttatgcagGAAGTTAGAAGGCGTGGCTTGAAAGTTGCAGTGGTCGGAATTCCAAAAACT
EST: gi|151406712|gb|EV276527.1|EV276527
EST:     GGAGGATATGGAACTCAGTATG-AGCAGCTATGATTTTTGAG                         GAAGTTAGAAGGCGTGGCTTGAAAGTTGCAGTGGTCGGAATTCCAAAAACT
genomic: GGAGGATATGGAACTCAGTATGAAGCAGCTATGATTTTTGAGgtaattaata ... atttatgcagGAAGTTAGAAGGCGTGGCTTGAAAGTTGCAGTGGTCGGAATTCCAAAAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataataattttcactatttaaatttgtactcacaagattaagttatttatgcagGAAGTTAGAAGGCGTGGCTTGAAAGTTGCAGTGGTCGGAATTCCAAAAACTATTGACAATGATATCCCA
                           tactcac  putative branch site (score: 1)
     taattttcactattta  TA-rich tract