1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccttgtattatttttggtagtatcatgcataaatgccagctaaaaggaaatatttttgtttaagtttttgccatcttaatggatatttacatgattgcagCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACAGTAATAGATCAACTTGTCTATTGTATAAATAGTTATAGAGAAGCTGCAA
species | Glycine max |
transcript | GLYMA15G01750.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAG CAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGGAGAGGGGEST: gi|193573764|gb|FK531056.1|FK531056
genomic: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAGgtaagaactt ... atgattgcagCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGG-AGAGGGG
EST: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAG CAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACAEST: gi|193639186|gb|FK586407.1|FK586407
genomic: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAGgtaagaactt ... atgattgcagCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACA
EST: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAG CAAGGTGATCCAATTGGAGAGCGTTACAAAGAATACATGGAGAGGGGTACAEST: gi|193462405|gb|FK425518.1|FK425518
genomic: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAGgtaagaactt ... atgattgcagCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACA
EST: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAG CAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACAEST: gi|33388505|gb|CA851712.1|CA851712
genomic: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAGgtaagaactt ... atgattgcagCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACA
EST: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAG CAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACAEST: gi|33390219|gb|CA853426.1|CA853426
genomic: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAGgtaagaactt ... atgattgcagCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACA
EST: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAG CAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACAEST: gi|105634312|gb|DW247461.1|DW247461
genomic: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAGgtaagaactt ... atgattgcagCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACA
EST: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAG CAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTEST: gi|193488401|gb|FK457540.1|FK457540
genomic: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAGgtaagaactt ... atgattgcagCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGT
EST: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAG CAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACAEST: gi|193560375|gb|FK516826.1|FK516826
genomic: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAGgtaagaactt ... atgattgcagCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACA
EST: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCA-GA-G CAAGGTGATCCA
genomic: AAGATGAAACTAAAGGTGTATACATTGCCAAGCTAGAAGAACTCAAGAAGgtaagaactt ... atgattgcagCAAGGTGATCCA
ggaaatatttttgtttaagtttttgccatcttaatggatatttacatgattgcagCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACAGTAATAGATCAACTTGTCTATTGTATAAATAGTTATAGAGAAGCTGCAA
tcttaat putative branch site (score: 3)
tatttttgtttaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgtattatttttggtagtatcatgcataaatgccagctaaaaggaaatatttttgtttaagtttttgccatcttaatggatatttacatgattgcagCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGAGAGGGGTACAGTAATAGATCAACTTGTCTATTGTATAAATAGTTATAGAGAAGCTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
ccttgta
- - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - -aatgcca
- - - - - - - - - - - - - - - - - - - - - aaaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccatc