Sequence
atgc intronic sequence ATGC exonic sequencegtgaagtttattacattcttagaatatactttagtctgcctttacgtctgaaaactttctaacagtttgatttttatcagTGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGCAAAGAGTATCTAGCTCCAGTTATTACTCCCTTCGAAGCAATGATAGCTT
Basic information
species | Glycine max |
transcript | GLYMA15G01090.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G01090.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os11g16430.1 (Oryza sativa), 3'ss of exon 7
------gtgaagtttattacattcttagaatatactttagtctgcctttacgtctgaaaactttctaacagtttgatttttatcagTGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGCAAAGAGTATCTAGCTCCAGTTATTACTCCCTTCGAAGCAATGATAGCTT
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gtgctactgagttctaatatgttttctctgcttttcatgttaaggataactgactcaccattctttttttttttttggtatggcagTGTGAAGTTTTTGTTTATGTTTCTTGTGCCCAAACTGCTCTATTGGATAGCAAAGATTTTTTAGCTCCAGTCATTACGCCTTTCGAAGCTGTATTAGCTT
upper sequence: GLYMA15G01090.1 (Glycine max), 3'ss of exon 7
lower sequence: AC217358.3_FGT003 (Zea mays), 3'ss of exon 7
--gtgaagtttattacattcttagaatatactttagtctgcctttacgtctgaaaactttctaacagtttgattttt---atcagTGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGCAAAGAGTATCTAGCTCCAGTTATTACTCCCTTCGAAGCAATGATAGCTT
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gtgtgctactttaatcagctctgaactgtttttttctctg--ttaaccaattgatgccatctgacattgtttttccttggagcagTGCGAAGTTTTTATTTATGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGCAAGGATTTTTTAGCTCCAGTTATTACACCTTTTGAAGCTGTACTAGCTT
upper sequence: GLYMA15G01090.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0094g00370.t01 (Vitis vinifera), 3'ss of exon 7
---------------gtgaagtttattacattcttagaatatactttagtctgcctttacgtctgaaaactttc-taacagtttgatttttatcagTGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGCAAAGAGTATCTAGCTCCAGTTATTACTCCCTTCGAAGCAATGATAGCTT
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gtaatcttctgaaccatgtaaatggataattgtctggtttctgctaggggtgataagaatatatttgagttctaatgacatctacattttgggcagTGTGATGTTTTCATATATGTCTCTTGTGCCCAAACTGCTCTCTTGGATAGTAAAGAATTCCTAGCTCCAGTAATTACTCCTTTCGAAGCGATGCTTGCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254315125|gb|GR830118.1|GR830118EST: CTTTGGTTATGGGAAGACCGAACCCAGCTAAACTTGCTAACTTTCCTGAG TGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGC
genomic: CTTTGGTTATGGGAAGACCGAACCCAGCTAAACTTGCTAACTTTCCTGAGgtgaagttta ... tttttatcagTGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGC
EST:
gi|10709535|gb|BF009259.1|BF009259EST: CTAAACTTGCTAACTTTCCTGAG TGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGC
genomic: CTAAACTTGCTAACTTTCCTGAGgtgaagttta ... tttttatcagTGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atactttagtctgcctttacgtctgaaaactttctaacagtttgatttttatcagTGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGCAAAGAGTATCTAGCTCCAGTTATTACTCCCTTCGAAGCAATGATAGCTT
tttttatc CT-rich tract
agtttgatttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaagtttattacattcttagaatatactttagtctgcctttacgtctgaaaactttctaacagtttgatttttatcagTGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGCAAAGAGTATCTAGCTCCAGTTATTACTCCCTTCGAAGCAATGATAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA