Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttcttcatgtcttcttcagccatttaatttttgttttcttttaaaatgtattttcatgccatgcttctctatggatttgcctcagGCACAATCTCTTCTTGCACTCAGCACTGGTGCTCTCTAGGAAAATACCACGATCAGTTCTGGGAATTAGG

Basic information

species Glycine max
transcript GLYMA15G00590.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00590.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 8
gtgggttcttcatgtcttcttcagccatttaatttt---tgttttcttttaaaatgtattttcatgccatgcttctct-atggatttgcctcagGCACAATCTCTTCTTGCACTCAGCACTGGTGCTCTCTAGGAAAATACCACGATCAGTTCTGGGAATTAGG
||  |||  | |||||      |     ||| ||||   ||  || ||  ||||  |||| || |         |||| ||| | ||||  |||||||||||||||| | ||||||||| ||||||| || ||||||||||||||||| ||||  || || |  
gtaagtttcttatgtccatgagaagtgcttatttttccatgcatttttcaaaaaaatattctcttctttgttgactctcatgcacttgctgcagGCACAATCTCTTCCTTCACTCAGCATTGGTGCTTTCCAGGAAAATACCACGATCTGTTCGTGGCATCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttttcttttaaaatgtattttcatgccatgcttctctatggatttgcctcagGCACAATCTCTTCTTGCACTCAGCACTGGTGCTCTCTAGGAAAATACCACGATCAGTTCTGGGAATTAGG
                                             tttgcctc  CT-rich tract
     ttcttttaaaatgtat  TA-rich tract