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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagacaaccatgctcaacacgtaccatctttgaattaagtagttctagctaggcaaatacatgtacgctgtagtttacctttttttcttcctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGTAAAGACTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGAC

Basic information

species Glycine max
transcript GLYMA15G00560.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00560.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0018g01780.t01 (Vitis vinifera), 3'ss of exon 7
-------aagacaaccatgctcaacacgtaccatctttgaattaagtagttctagctaggcaaatacatgtacgctgtagtttacctttttttcttcctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGTAAAGACTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGAC
            | ||   |   |||| |||| || |    ||  |  |   |  || |   |   || | |    |||  |||  | || | |||     |||||| ||| | |||||||| || || ||||| |||||||||||||||||||| |||||||  || || ||||||||||| |  |||||||| ||||| ||||||
tgttgaggttgaagccccacatgacac-taccctcctaatgttgtggggcaatgccttgatcag--caggcaaatagtaacttagttcttatcctt----gttgcagCTTGCTTTATGTGGAAACTGCAGATCGCCCTGGATTACTGGTGGATCTCGTAAAGAGCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13180962|gb|BG352302.1|BG352302
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|31561080|gb|CD486918.1|CD486918
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|31458838|gb|CD400866.1|CD400866
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|192321695|gb|FK014039.1|FK014039
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACG-CCCAAA-CGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGC-TGGATTACTGGTGG-TCTTG
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTG
EST: gi|19270328|gb|BM886584.1|BM886584
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|120529813|gb|EH257947.1|EH257947
EST:     TGGAGATAGCAAACCCAAATAACCATCTCTGATGACGGNCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGGCTGG
genomic: TGGAGATAGCAA-CCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGG
EST: gi|31469241|gb|CD411269.1|CD411269
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCCAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|120528775|gb|EH256909.1|EH256909
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|31465213|gb|CD407241.1|CD407241
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|22525960|gb|BU084771.1|BU084771
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|31561420|gb|CD487258.1|CD487258
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|6134263|gb|AW132656.1|AW132656
EST:     GTGGATATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|120491081|gb|EH219248.1|EH219248
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|6227733|gb|AW156332.1|AW156332
EST:     CCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: CCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|7685965|gb|AW756613.1|AW756613
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|120494269|gb|EH222436.1|EH222436
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|214006697|gb|DB987579.1|DB987579
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|31476080|gb|CD418108.1|CD418108
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCNAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|8670314|gb|BE191421.1|BE191421
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|18734777|gb|BM528381.1|BM528381
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCT
EST: gi|18038897|gb|BM307191.1|BM307191
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|31305353|gb|CD390556.1|CD390556
EST:     GGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|22525511|gb|BU084322.1|BU084322
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|8670334|gb|BE191441.1|BE191441
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|8825880|gb|BE209610.1|BE209610
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|9902370|gb|BE611338.1|BE611338
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|31308476|gb|CD393679.1|CD393679
EST:     AGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: AGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|31305762|gb|CD390965.1|CD390965
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|9901764|gb|BE610732.1|BE610732
EST:     AAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: AAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|120530189|gb|EH258323.1|EH258323
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|31458576|gb|CD400604.1|CD400604
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|13125321|gb|BG315891.1|BG315891
EST:     GGAGATAGCAANCCCAAATTAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GGAGATAGCAA-CCCAAAT-AACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|120497144|gb|EH225311.1|EH225311
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|22522210|gb|BU081021.1|BU081021
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|120491074|gb|EH219241.1|EH219241
EST:     GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
EST: gi|120531768|gb|EH259901.1|EH259901
EST:     GTGGAGATAGCAACCCAAATAACCATTTCTGATGACGGCCCAAAACGAAG                         TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT
genomic: GTGGAGATAGCAACCCAAATAACCATCTCTGATGACGGCCCAAAACGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctaggcaaatacatgtacgctgtagtttacctttttttcttcctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGTAAAGACTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGAC
                            tttacctttttttctt  CT-rich tract
                                  tttttttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aagacaaccatgctcaacacgtaccatctttgaattaagtagttctagctaggcaaatacatgtacgctgtagtttacctttttttcttcctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGTAAAGACTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - catgctc
- - - - - - - - -cacgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtag