1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttaaaaatagatgtcaaatattttcatgtctctttattttcttaattttgactggtaggaattttatcctgatgcctaaaattctttttacgttggcagGTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCATGCAGCAGGTCTTTTCTCTGTTGAAAAAAAGAG
species | Glycine max |
transcript | GLYMA14G24900.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGCCTGTTATATATGACCGTGGGCTGATAGGAGTTATGCATGATTG GTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCATGCAGCEST: gi|192314702|gb|FK006628.1|FK006628
genomic: ACCTTGCCTGTTATATATGACCGTGGGCTGATAGGAGTTATGCATGATTGgtatgaaaaa ... acgttggcagGTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCATGCAGC
EST: ACCTTGCCTGTTATATATGACCGTGGGCTGATAGGAGTTATGCATGATTG GTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCATGCAGCEST: gi|192314701|gb|FK006627.1|FK006627
genomic: ACCTTGCCTGTTATATATGACCGTGGGCTGATAGGAGTTATGCATGATTGgtatgaaaaa ... acgttggcagGTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCATGCAGC
EST: ACCTTGCCTGTTATATATGACCGTGGGCTGATAGGAGTTATGCATGATTG GTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCATGCAGC
genomic: ACCTTGCCTGTTATATATGACCGTGGGCTGATAGGAGTTATGCATGATTGgtatgaaaaa ... acgttggcagGTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCATGCAGC
attttgactggtaggaattttatcctgatgcctaaaattctttttacgttggcagGTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCATGCAGCAGGTCTTTTCTCTGTTGAAAAAAAGAG
gcctaaa putative branch site (score: 3)
ttctttttac CT-rich tract
taaaattcttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaaaaatagatgtcaaatattttcatgtctctttattttcttaattttgactggtaggaattttatcctgatgcctaaaattctttttacgttggcagGTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCATGCAGCAGGTCTTTTCTCTGTTGAAAAAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- -aaaaata
- - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - ttgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgc