1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttctgtctatatcatcaatctgcaccaagctttaaacttggtttcctcttaatttgaaattatgagaagttgtaatttttgtattttttttcttatgcagGTTATTTTGCTTTTTTCCTGCATGCTGGCATTCTTCTTGAATTACTGTATTTTTCTGAACACAACACTAAATTCAGCTGTGACACAGACAATTTGTGGTA
species | Glycine max |
transcript | GLYMA14G14360.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTTGATGACAACAATCAATTTTCCACATCTCTTCTCACCTGG-TTTATA GTTATTTTGCTTTTTTCCTGCATGCTGGCATTCTTCTTGAATTACTGTATTEST: gi|254346686|gb|GR856408.1|GR856408
genomic: ACTTGATGACAACAATCAATTTTCCACATCTCTTCTCACCTGGTTTTATAgtatgttctg ... tcttatgcagGTTATTTTGCTTTTTTCCTGCATGCTGGCATTCTTCTTGAATTACTGTATT
EST: ACTTGATGACAACAATCAATTTTCCACATCTCTTCTCACCTGGTTTTATA GTTATTTTGCTTTTTTCCTGCATGCTGGCATTCTTCTTGAATTACTGTATT
genomic: ACTTGATGACAACAATCAATTTTCCACATCTCTTCTCACCTGGTTTTATAgtatgttctg ... tcttatgcagGTTATTTTGCTTTTTTCCTGCATGCTGGCATTCTTCTTGAATTACTGTATT
ctcttaatttgaaattatgagaagttgtaatttttgtattttttttcttatgcagGTTATTTTGCTTTTTTCCTGCATGCTGGCATTCTTCTTGAATTACTGTATTTTTCTGAACACAACACTAAATTCAGCTGTGACACAGACAATTTGTGGTA
tcttaat putative branch site (score: 3)
tttttgtatttttttt putative PPT
aaattatgagaagttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgtctatatcatcaatctgcaccaagctttaaacttggtttcctcttaatttgaaattatgagaagttgtaatttttgtattttttttcttatgcagGTTATTTTGCTTTTTTCCTGCATGCTGGCATTCTTCTTGAATTACTGTATTTTTCTGAACACAACACTAAATTCAGCTGTGACACAGACAATTTGTGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
ttctgtc
- - - - - - - - - - tgcacca