1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttcatgagccatatctgataaaacatgtaattgtaaaaacagaaagccatgccctgaagtcttaactcatctaactctcaatcttttcacttttctccagGAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAGAGGCTAATGCAAGAAGCATATCAGCGAGGTAGTTCTGACAACATTACGT
species | Glycine max |
transcript | GLYMA14G12220.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTTTCTTATATTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAG GAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAGEST: gi|58019366|gb|CX706108.1|CX706108
genomic: AGTTTCTTATATTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAGgttggcaatg ... ttttctccagGAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAG
EST: AGTTTCTTATATTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAG GAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAGEST: gi|27424402|gb|CA935922.1|CA935922
genomic: AGTTTCTTATATTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAGgttggcaatg ... ttttctccagGAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAG
EST: AGTTTCTTATATTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAG GAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAGEST: gi|193691658|gb|FK629775.1|FK629775
genomic: AGTTTCTTATATTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAGgttggcaatg ... ttttctccagGAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAG
EST: AGTTTCTTATATTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAG GAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAGEST: gi|120495866|gb|EH224033.1|EH224033
genomic: AGTTTCTTATATTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAGgttggcaatg ... ttttctccagGAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAG
EST: AGTCTCTTATATTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAG GAAGCTGTTGCTATGATTAAACCAATTGAGGATCCCGAGGAGCCAGCAAAG
genomic: AGTTTCTTATATTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAGgttggcaatg ... ttttctccagGAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAG
gccatgccctgaagtcttaactcatctaactctcaatcttttcacttttctccagGAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAGAGGCTAATGCAAGAAGCATATCAGCGAGGTAGTTCTGACAACATTACGT
atctaac putative branch site (score: 2)
ctctcaatcttttcac CT-rich tract
aatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatgagccatatctgataaaacatgtaattgtaaaaacagaaagccatgccctgaagtcttaactcatctaactctcaatcttttcacttttctccagGAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAGAGGCTAATGCAAGAAGCATATCAGCGAGGTAGTTCTGACAACATTACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
-tcatgag
- - - - - - - - - - - -catgtaa
- - - - - - - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - -catgccc