Sequence
atgc intronic sequence ATGC exonic sequence...aagatcttcttatacaagagttgctttgattgtgaaagtacttagtagtttttttgtgtgctgattttggtaatttggcatgaatgggttggcatgacagGAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCGCTAGCTCAGTTCAAATCTGAA
Basic information
species | Glycine max |
transcript | GLYMA14G10790.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G10790.2 (Glycine max), 3'ss of exon 7
lower sequence: AT5G11850.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------------aagatcttct-tatacaagagttgctttgattgtgaaagtacttagtagtttttttgtgtgctgattttggtaat-ttggcatgaatgggttgg-catgacagGAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCGCTAGCTCAGTTCAAATCTGAA
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gtgagttatgttttgtagtcttaatctacttatccttgcaatgttttttaatctgcagtttctaaaaatcactctcacattcccttcgatgaagagatttgctattt--tagtcatggagttcttggactgattgtgtttttcctttcagGAAGTGGCTGTTAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCATTGACACAGTTCAAATCTGAA
upper sequence: GLYMA14G10790.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 3'ss of exon 6
aagatcttcttatacaagagttgctttgattgtgaaagtacttagtagtttttttgtgtgctgattttggtaatttggcatgaatgggttggcatg----acagGAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCGCTAGCTCAGTTCAAATCTGAA
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gagatgt---gatagaaattctggatcatgagtgttgatgatttatcccatttaaaactgtttattggtttgttttagtgtga-taaatttgtatttcatacagGAGGTTGCTGTGAAGAAGTTCCTAGCCCAAGATTTCTCTGGTGATGCATTGGTTCAGTTTAGATACGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagtttttttgtgtgctgattttggtaatttggcatgaatgggttggcatgacagGAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCGCTAGCTCAGTTCAAATCTGAA
tgctgat putative branch site (score: 3)
taattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagatcttcttatacaagagttgctttgattgtgaaagtacttagtagtttttttgtgtgctgattttggtaatttggcatgaatgggttggcatgacagGAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCGCTAGCTCAGTTCAAATCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA