Sequence
atgc intronic sequence ATGC exonic sequencegttagtatggatggagtatatttatctgataaaatattatttgtagtcttgcctagggaaaggtggatgaacttgtacagtgcaaagtgaatagaatgtaaaattttctctcatcatatgcagTCCCAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTTGATTCTGCTATCATGGATACTAATGAATGCCAACCCCTTC
Basic information
species | Glycine max |
transcript | GLYMA14G08450.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G08450.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G342105_T02 (Zea mays), 3'ss of exon 4
gttagtatggatggagtatatttatctgataaaatattatttgtagtcttgcctagggaa---aggtggatgaacttgtacagtgcaaagtgaatagaatgtaaaatt-ttctctcatcatatgcagTCCCAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTTGATTCTGCTATCATGGATACTAATGAATGCCAACCCCTTC
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--------------------------tgatgaattgtattatcttgtgccgcctatagcacacatcttcctgattttg-gctttccaatgacatttccttcttttattgttttgttgtcaaccctagCCAAAGGACAGTCAATACATAACATTAGATGATGGCCGGAGACTCTGCTTGGAGTGTCTGCATACTGCTATTATGGAGACCAATGAATGCCAGCCACTGT
upper sequence: GLYMA14G08450.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0001g11820.t01 (Vitis vinifera), 3'ss of exon 7
gttagtatggatggagtatatttatctgataaaatattatttgtagtcttgcctagggaaaggtggatgaacttgtacagtgcaaagtgaatagaatgtaaaattttctctcatcatatgcagTCCCAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTTGATTCTGCTATCATGGATACTAATGAATGCCAACCCCTTC
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gttagtctgaatga--tttatttattc--ttaaatctgaaaatatggcctgtttatg--attcttgaggagaatatagatgactgggt------aacataaaaattt-tgttaatatatgcagCCACGGGACACAAGATATGTTGCCCTTAATGATGGTCGGAAGCTCTGCCTGGAGTGTCTGGACTCTGCAATCATGGATACCAATGAATGTCAACCCCTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaacttgtacagtgcaaagtgaatagaatgtaaaattttctctcatcatatgcagTCCCAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTTGATTCTGCTATCATGGATACTAATGAATGCCAACCCCTTC
ttttctctcatcat CT-rich tract
aatagaatgtaaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtatggatggagtatatttatctgataaaatattatttgtagtcttgcctagggaaaggtggatgaacttgtacagtgcaaagtgaatagaatgtaaaattttctctcatcatatgcagTCCCAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTTGATTCTGCTATCATGGATACTAATGAATGCCAACCCCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA