Sequence
atgc intronic sequence ATGC exonic sequence...tgttgggacttgggaagggttaaagcccatgcaatgcttcaaatcaactaaagaataaagaattacatttgttgacctctatgtccttgctctcttgcagGAATTTTACCCTGTACAATATTGATACCTGGCCTATTTTTCATTCCCGAGTCCCCTAGATGGCTG
Basic information
species | Glycine max |
transcript | GLYMA14G08070.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G08070.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 3'ss of exon 6
----tgttgggacttgggaagggttaaagcccatgcaatgcttcaaatcaactaaagaataaagaattacatttgttgacctctatgtccttgctctcttgcagGAATTTTACCCTGTACAATATTGATACCTGGCCTATTTTTCATTCCCGAGTCCCCTAGATGGCTG
| | | | ||| || ||| || | || |||| || |||| || ||| || | ||| ||| || | | || |||||| || || || || | ||||||||||||||||| |||||||| || ||||| |||||| ||
tttttttcacaagtattaaagtaatagtttggatgtcatatat-gcgtctactag-gagtaaatggtttt-tttattcaaatctgtgttttt-tttgcatgtagGAATCTTGCCTTGCACTGTGTTGATACCTGGCCTATTCTTCATTCCAGAATCCCCAAGATGGTTG
upper sequence: GLYMA14G08070.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G077546_T02 (Zea mays), 3'ss of exon 6
-tgttgggacttgggaagggt-taaagcccatgcaatgcttcaaatcaactaaagaataaagaattacatt-tgttgacctctatgtccttgctctcttgcagGAATTTTACCCTGTACAATATTGATACCTGGCCTATTTTTCATTCCCGAGTCCCCTAGATGGCTG
| || || | | || ||| | | ||||| | | || || ||| | | | ||| | | | |||| ||||| || ||||| | | ||||||||||||||||| |||||||| || || || |||||||||
ctcttataacatattttttgcatagtatagatgtagtagg-caaat--attttgttttaggcccttttattgtatcataaagtgtgtgatgccacacttgtagGAACGTTGCCCTGCTTATTTTTGATACCTGGCCTATTCTTCATTCCGGAATCTCCAAGATGGCTG
upper sequence: GLYMA14G08070.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0001g12560.t01 (Vitis vinifera), 3'ss of exon 7
-tgttgggacttgggaagggttaaagcccatgcaatgcttcaaatcaactaaagaataaagaattacatttgttgacctctatgtccttgctctcttgcagGAATTTTACCCTGTACAATATTGATACCTGGCCTATTTTTCATTCCCGAGTCCCCTAGATGGCTG
|| | | | | || || | | |||| | | || || | || ||| | || | | | || | | |||||||||| || || || ||||| |||||||||||||||||||| || || || || ||| | |||||
cccctgacatctaatttccatgtgattgaata-aaagatgcaaaatatatgaaaaaagcaccggtaaattgatggaaccttgcaacatttttgttttgcagGAATATTGCCTTGCACAATTTTGATACCTGGCCTATTTTTTATCCCAGAATCTCCTCGGTGGCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactaaagaataaagaattacatttgttgacctctatgtccttgctctcttgcagGAATTTTACCCTGTACAATATTGATACCTGGCCTATTTTTCATTCCCGAGTCCCCTAGATGGCTG
cctctatgtccttgct CT-rich tract
aataaagaattacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgttgggacttgggaagggttaaagcccatgcaatgcttcaaatcaactaaagaataaagaattacatttgttgacctctatgtccttgctctcttgcagGAATTTTACCCTGTACAATATTGATACCTGGCCTATTTTTCATTCCCGAGTCCCCTAGATGGCTG
tgttggg
- - - - - - ggaaggg
- - - - - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - aagaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttgc