1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaagatgctattctttttatctttatccagaaaaatgagtttcagctgtaatggttatgcactgaatatcttagtttgtttgcaatttgatctatattagGTGTATTTTATCGACCTTGATTTAAAGCGCTTAAGTAAAGTGGAAGACTACTATGAATTAGATAAGAAGATAGTGAACTGCTACAGACAAATCATCAAAA
species | Glycine max |
transcript | GLYMA14G07880.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGTACGATAATGTATATCTGGACTCAACGGAGCAATCCTTTGATTATAAG GTGTATTTTATCGACCTTGATTTAAAGCGCTTAAGTAAAGTGGAAGACTAC
genomic: TGTACGATAATGTATATCTGGACTCAACGGAGCAATCCTTTGATTATAAGgtaggcagaa ... tctatattagGTGTATTTTATCGACCTTGATTTAAAGCGCTTAAGTAAAGTGGAAGACTAC
ctgtaatggttatgcactgaatatcttagtttgtttgcaatttgatctatattagGTGTATTTTATCGACCTTGATTTAAAGCGCTTAAGTAAAGTGGAAGACTACTATGAATTAGATAAGAAGATAGTGAACTGCTACAGACAAATCATCAAAA
atttgat putative branch site (score: 5)
aatttgatctatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagatgctattctttttatctttatccagaaaaatgagtttcagctgtaatggttatgcactgaatatcttagtttgtttgcaatttgatctatattagGTGTATTTTATCGACCTTGATTTAAAGCGCTTAAGTAAAGTGGAAGACTACTATGAATTAGATAAGAAGATAGTGAACTGCTACAGACAAATCATCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- -gatgcta
- - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - cagctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcac