1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agcattattttcttcctgtgtttaatttcagagagcttttaaatggattctttcagatgcatattctagtatgtgaattttcttttgtactttgcatcagCCTACATGCTCCTAACCAGAAACTTAGGGAGACAATTGTTCCAAGTGCAAAATCCTATCCACTGGATGCACTTATGAGTGATTGCAGAGAATACTTTCAG
species | Glycine max |
transcript | GLYMA14G07450.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAATAAAGAAACTTGCTTCTCACAAACTTCAATCCACTCTAGCTGTGAG CCTACATGCTCCTAACCAGAAACTTAGGGAGACAAATTAGTTACCAAGTGCEST: gi|15287259|gb|BI471150.1|BI471150
genomic: ACAATAAAGAAACTTGCTTCTCACAAACTTCAATCCACTCTAGCTGTGAGgtaaattacc ... tttgcatcagCCTACATGCTCCTAACCAGAAACTTAGGGAGACAA-TT-GTT-CCAAGTGC
EST: ACAATAAAGAAACTTGCTTCTCACAAACTTCAATCCACTCTAGCTGTGAG CCTACATGCTCCTAACCAGAAACTTAGGGAGACAATTGTTCCAAGTGCAAAEST: gi|208135449|gb|GD937512.1|GD937512
genomic: ACAATAAAGAAACTTGCTTCTCACAAACTTCAATCCACTCTAGCTGTGAGgtaaattacc ... tttgcatcagCCTACATGCTCCTAACCAGAAACTTAGGGAGACAATTGTTCCAAGTGCAAA
EST: ACAATAAAGAAACTTGCTTCTCACAAACTTCAATCCACTCTAGCTGTGAG CCTACATGCTCCTAACCAGAAACTTAGGGAGACAAATTAGTTAACCAAGTG
genomic: ACAATAAAGAAACTTGCTTCTCACAAACTTCAATCCACTCTAGCTGTGAGgtaaattacc ... tttgcatcagCCTACATGCTCCTAACCAGAAACTTAGGGAGACAA-TT-GTT--CCAAGTG
gattctttcagatgcatattctagtatgtgaattttcttttgtactttgcatcagCCTACATGCTCCTAACCAGAAACTTAGGGAGACAATTGTTCCAAGTGCAAAATCCTATCCACTGGATGCACTTATGAGTGATTGCAGAGAATACTTTCAG
ttttcttttgtacttt CT-rich tract
aattttcttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcattattttcttcctgtgtttaatttcagagagcttttaaatggattctttcagatgcatattctagtatgtgaattttcttttgtactttgcatcagCCTACATGCTCCTAACCAGAAACTTAGGGAGACAATTGTTCCAAGTGCAAAATCCTATCCACTGGATGCACTTATGAGTGATTGCAGAGAATACTTTCAG
- - - - -ttcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgtg