1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tagagcaagtttctctagttttctattaaatctagaggaaaggcagtaggtttttgtatttttgttgagctttcttgtcatattttaatttacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTGCTGAACCAATTCAGACT
species | Glycine max |
transcript | GLYMA14G06780.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTEST: gi|208280434|gb|GE080548.1|GE080548
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTEST: gi|208124750|gb|GD924196.1|GD924196
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTEST: gi|193359542|gb|FK324599.1|FK324599
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGACTEST: gi|208240488|gb|GE040970.1|GE040970
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTG-CT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTEST: gi|207787324|gb|GD756721.1|GD756721
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTEST: gi|193513684|gb|FK466458.1|FK466458
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTEST: gi|193386958|gb|FK351255.1|FK351255
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGEST: gi|208089303|gb|GD888636.1|GD888636
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTG
EST: TTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTEST: gi|13562572|gb|BG550792.1|BG550792
genomic: TTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTEST: gi|51335938|gb|CO979804.1|CO979804
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTEST: gi|209723708|gb|BW682787.1|BW682787
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: TTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTEST: gi|192331880|gb|FK026664.1|FK026664
genomic: TTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: CTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGATGCTTEST: gi|209703691|gb|BW670681.1|BW670681
genomic: CTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
gtaggtttttgtatttttgttgagctttcttgtcatattttaatttacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTGCTGAACCAATTCAGACT
ttttaat putative branch site (score: 3)
tttcttgtcatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagagcaagtttctctagttttctattaaatctagaggaaaggcagtaggtttttgtatttttgttgagctttcttgtcatattttaatttacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTGCTGAACCAATTCAGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgag