Sequence
atgc intronic sequence ATGC exonic sequence...agtgtaagggtgttcaccctttaaatgttgcttaaactattagtaatacattatgaaatatgaatacaaagtaaccattccccatgttaataccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATATGCTAAGAATCAAA
Basic information
species | Glycine max |
transcript | GLYMA14G05430.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 7
--agtgtaagggtgttcaccctttaaatgtt--gcttaaactattagtaatacattatgaaatatgaatacaaagtaaccattccccatgttaataccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATATGCTAAGAATCAAA
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gaagaatataaatcaaagctaatcaaatttttggttttaattttctgttttatccaatggaccacg---ctgaactgattgattatcg-gctgctacttttcagGTTGTAAATGAACCAGCAGATATGCAGTGTCCGATTGTGGAGATGTCAACTCGGTCTAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACA
upper sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 7
agtg-taagggtgttcaccctttaaatgttgcttaaactattagtaatacattatgaaatatgaatacaaagt-aaccattccccatgttaataccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATATGCTAAGAATCAAA
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--tgcttagcttggtcatatggtcacaataactgattattatagtaaaataattttgtctaccgctggtttgttgattgttgccttttctctcactttccagGTTGTGAATGAACGTGCAGAAATGCACTGTCCTGTTGTGGAGATGTCCACTCGATCCAAACTTAGTTGCTTGAGTTGGAACAAGTGTACTAAGAATCATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|105633923|gb|DW247286.1|DW247286EST: TTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCT GTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACA
genomic: TTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCTgtatgatgga ... taccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atacattatgaaatatgaatacaaagtaaccattccccatgttaataccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATATGCTAAGAATCAAA
taccttcc CT-rich tract
ttatgaaatatgaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtgtaagggtgttcaccctttaaatgttgcttaaactattagtaatacattatgaaatatgaatacaaagtaaccattccccatgttaataccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATATGCTAAGAATCAAA
- - - - - - ttcaccc
- - - - - - - - - - - - -tgttgct