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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtgtaagggtgttcaccctttaaatgttgcttaaactattagtaatacattatgaaatatgaatacaaagtaaccattccccatgttaataccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATATGCTAAGAATCAAA

Basic information

species Glycine max
transcript GLYMA14G05430.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 7
--agtgtaagggtgttcaccctttaaatgtt--gcttaaactattagtaatacattatgaaatatgaatacaaagtaaccattccccatgttaataccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATATGCTAAGAATCAAA
  ||  ||    |     |   | |||| ||  | || || | |  ||  ||    ||| |  | |      || | |    |   |  | |  ||| || |||||||| ||||||||  |||||   || |||||  ||||||||||||| || || || ||||||||||||||||||||||||||  |||  || ||||| |
gaagaatataaatcaaagctaatcaaatttttggttttaattttctgttttatccaatggaccacg---ctgaactgattgattatcg-gctgctacttttcagGTTGTAAATGAACCAGCAGATATGCAGTGTCCGATTGTGGAGATGTCAACTCGGTCTAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACA

upper sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 7
agtg-taagggtgttcaccctttaaatgttgcttaaactattagtaatacattatgaaatatgaatacaaagt-aaccattccccatgttaataccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATATGCTAAGAATCAAA
  || | ||  || |||     | |   |  || |   |  |||||| | | | |    ||    |     ||  |   || ||  |  |   || ||||||||||||||||||| | ||||    ||||||||||||||||||||||| || || || ||||||||||||||||||||||| || | | |||||||||| |
--tgcttagcttggtcatatggtcacaataactgattattatagtaaaataattttgtctaccgctggtttgttgattgttgccttttctctcactttccagGTTGTGAATGAACGTGCAGAAATGCACTGTCCTGTTGTGGAGATGTCCACTCGATCCAAACTTAGTTGCTTGAGTTGGAACAAGTGTACTAAGAATCATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633923|gb|DW247286.1|DW247286
EST:     TTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCT                         GTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACA
genomic: TTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCTgtatgatgga ... taccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACA
EST: gi|7042199|gb|AW472102.1|AW472102
EST:     TTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCT                         GTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACA
genomic: TTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCTgtatgatgga ... taccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACA
EST: gi|151403867|gb|EV273677.1|EV273677
EST:     TTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCT                         GTTGTGAATGAACCTACAGATGCTCGCTGTCCTGTTGTGGAGATGTCTACA
genomic: TTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCTgtatgatgga ... taccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacattatgaaatatgaatacaaagtaaccattccccatgttaataccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATATGCTAAGAATCAAA
                                             taccttcc  CT-rich tract
     ttatgaaatatgaata  TA-rich tract