1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gcaagtgccttcacttgtttcaatgtttttatttattttttatttttttattgttgttcttttattgccttaaattttaagaacatataagccttattcattctcatgtttcagGTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAAGCTGCCCTTTCAACCGGCGTTTTGCAG
species | Glycine max |
transcript | GLYMA14G04030.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCA-CAAA GTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAEST: gi|8826144|gb|BE209804.1|BE209804
genomic: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCAGCAAAgcaagtgcct ... catgtttcagGTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
EST: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCAGCAAA GTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
genomic: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCAGCAAAgcaagtgcct ... catgtttcagGTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
ttttattgccttaaattttaagaacatataagccttattcattctcatgtttcagGTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAAGCTGCCCTTTCAACCGGCGTTTTGCAG
ccttattcattctc CT-rich tract
ttaaattttaagaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgccttcacttgtttcaatgtttttatttattttttatttttttattgttgttcttttattgccttaaattttaagaacatataagccttattcattctcatgtttcagGTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAAGCTGCCCTTTCAACCGGCGTTTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC