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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgatcatagtcacattatgttgctactttattaattgctacatgcatccatcaacattttttatgtataacatattcttctctgtttatctgcatacagGAAGTATTGCTCCCTGGTGGTCACGGTCTTATGGTCAGGGGTTACCAGCCTGTTATAAATACCCTAGCCAAGGGTCTTGATATTCGCCAGGGACACAG

Basic information

species Glycine max
transcript GLYMA14G03610.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10848363|gb|BF070866.1|BF070866
EST:     GTTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAG                         GAAGTATTGCTCCCTGGTGGTCACGGTCTTATGGTCAGGGGTTACCAGCCT
genomic: GTTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAGgtaatttgac ... ctgcatacagGAAGTATTGCTCCCTGGTGGTCACGGTCTTATGGTCAGGGGTTACCAGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catccatcaacattttttatgtataacatattcttctctgtttatctgcatacagGAAGTATTGCTCCCTGGTGGTCACGGTCTTATGGTCAGGGGTTACCAGCCTGTTATAAATACCCTAGCCAAGGGTCTTGATATTCGCCAGGGACACAG
                    gtataac  putative branch site (score: 3)
                              ttcttctctgtttatc  putative PPT
     atcaacattttttatg  TA-rich tract