1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttagcattagctttgctgcaagttatgatctttaaatagttgcctaatcctcctcgtttggattataatgttacactctgacacaaccttgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAG
species | Glycine max |
transcript | GLYMA14G02180.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAACCGG GATGAGAACAGGTATAATGCAAGEST: gi|38193636|gb|CF922842.1|CF922842
genomic: AATGGATGTCAGCATGTGATGAAGAGAGTTGGCTTGAAGACTATAACCGGgtacttaaaa ... tgtaaaacagGATGAGAACAGGTATAATGCAAG
EST: AATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAACCGG GATGAGAACAGGTATAATGCAAGCAGAGGTGCGCACATAAACCTCAAACGTEST: gi|192314484|gb|FK008426.1|FK008426
genomic: AATGGATGTCAGCATGTGATGAAGAGAGTTGGCTTGAAGACTATAACCGGgtacttaaaa ... tgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGT
EST: AATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAACCGG GATGAGAACAG-TATAATGCAAGCAGAG-TGCACACATAAACCTCAAACGTEST: gi|9258416|gb|BE346563.1|BE346563
genomic: AATGGATGTCAGCATGTGATGAAGAGAGTTGGCTTGAAGACTATAACCGGgtacttaaaa ... tgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGT
EST: AATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAACCGG GATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGTEST: gi|192314483|gb|FK008425.1|FK008425
genomic: AATGGATGTCAGCATGTGATGAAGAGAGTTGGCTTGAAGACTATAACCGGgtacttaaaa ... tgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGT
EST: AATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGA-GACTATAACCGG GATGAGAACAG-TATAATGCAAGCAGAG-TGCACACATAAACCTCAAACGT
genomic: AATGGATGTCAGCATGTGATGAAGAGAGTTGGCTTGAAGACTATAACCGGgtacttaaaa ... tgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGT
taatcctcctcgtttggattataatgttacactctgacacaaccttgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAG
ctctgac putative branch site (score: 3)
attataatgttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagcattagctttgctgcaagttatgatctttaaatagttgcctaatcctcctcgtttggattataatgttacactctgacacaaccttgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAG
- - - - - - - - -tgcaagt
- - - - - - - - - - - - - - - - - - - -gttgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaacc