Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttagcattagctttgctgcaagttatgatctttaaatagttgcctaatcctcctcgtttggattataatgttacactctgacacaaccttgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAG

Basic information

species Glycine max
transcript GLYMA14G02180.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02180.4 (Glycine max), 3'ss of exon 7
lower sequence: AT4G26760.1 (Arabidopsis thaliana), 3'ss of exon 7
----tttagcattagctttgctgcaagttatgatctttaaatagttgcctaatcctcctcgtttggattataatgttacactctgacacaaccttgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAG
      || |||| ||| || |   |   |   |  |||   ||       ||     ||  ||| || ||  | ||    | |        || | |||||||||| |||||||||||| ||||||| ||||||| ||  | || |||||  | || |||||||| |||||  |||||| ||| ||| | |
gtatgctaacattggctatgttaataaacacattacttattaagc------atagagttcaattg-atgattcttttgggtttttgt----tctggaaaaacagGATCAGAACAGGTATAGTGCAAGCCGAGGTGCGCATTTGAATCTCAAGAGAGCTGAGAAAGCTCGGATTCTGGTCAGCAAGATTACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193598481|gb|FK554577.1|FK554577
EST:     AATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAACCGG                         GATGAGAACAGGTATAATGCAAG
genomic: AATGGATGTCAGCATGTGATGAAGAGAGTTGGCTTGAAGACTATAACCGGgtacttaaaa ... tgtaaaacagGATGAGAACAGGTATAATGCAAG
EST: gi|38193636|gb|CF922842.1|CF922842
EST:     AATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAACCGG                         GATGAGAACAGGTATAATGCAAGCAGAGGTGCGCACATAAACCTCAAACGT
genomic: AATGGATGTCAGCATGTGATGAAGAGAGTTGGCTTGAAGACTATAACCGGgtacttaaaa ... tgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGT
EST: gi|192314484|gb|FK008426.1|FK008426
EST:     AATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAACCGG                         GATGAGAACAG-TATAATGCAAGCAGAG-TGCACACATAAACCTCAAACGT
genomic: AATGGATGTCAGCATGTGATGAAGAGAGTTGGCTTGAAGACTATAACCGGgtacttaaaa ... tgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGT
EST: gi|9258416|gb|BE346563.1|BE346563
EST:     AATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAACCGG                         GATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGT
genomic: AATGGATGTCAGCATGTGATGAAGAGAGTTGGCTTGAAGACTATAACCGGgtacttaaaa ... tgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGT
EST: gi|192314483|gb|FK008425.1|FK008425
EST:     AATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGA-GACTATAACCGG                         GATGAGAACAG-TATAATGCAAGCAGAG-TGCACACATAAACCTCAAACGT
genomic: AATGGATGTCAGCATGTGATGAAGAGAGTTGGCTTGAAGACTATAACCGGgtacttaaaa ... tgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatcctcctcgtttggattataatgttacactctgacacaaccttgtaaaacagGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACATAAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAG
                               ctctgac  putative branch site (score: 3)
                 attataatgttaca  TA-rich tract