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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgtccaatattgtccaagtagagaaaagttttttgcatgcaaaatgcaacaatgccttgcttgttttgtatggctttcaaaaggttgtatttttcttattttgcagCAAGTCGGACTCAACGTGATTACAGAGTTAATAATTGGGTACATTTACCCAGGAAGGCCACTTGCTAATGTAGCCTTCAAGACTTATGGGTACATCAGCA

Basic information

species Glycine max
transcript GLYMA14G01610.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G01610.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv19s0015g00850.t01 (Vitis vinifera), 3'ss of exon 6
gtaacgtccaatattgtccaagtagagaa---aagttttttgcatgcaaaatgcaacaat--gccttgcttgttttgtatggctttcaaaaggttgtatttttcttattttgcagCAAGTCGGACTCAACGTGATTACAGAGTTAATAATTGGGTACATTTACCCAGGAAGGCCACTTGCTAATGTAGCCTTCAAGACTTATGGGTACATCAGCA
           | || | |||| |        |   |||||  ||      | ||||  |    |  |        ||| |     |  |      || |    | || | ||||  | |||| || || ||||| ||||||||  | ||||||||||| || ||||| | ||| |||||||||||  | |||||||| ||||| |||||||| |
---------gttcttttacaaggattttctttattctttttttatcacgcgttcaacttttgaaccagaacaccaagtaagaaccccttataaacttaatgcattgatat-gcagACACTCGGGCTGAATGTGATCACAGAGTTGGTCATTGGGTACATATATCCAGGGAAGCCTCTTGCTAATGTGTCTTTCAAGACGTATGGCTACATCAGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgccttgcttgttttgtatggctttcaaaaggttgtatttttcttattttgcagCAAGTCGGACTCAACGTGATTACAGAGTTAATAATTGGGTACATTTACCCAGGAAGGCCACTTGCTAATGTAGCCTTCAAGACTTATGGGTACATCAGCA
                                    tatttttcttatttt  CT-rich tract
                                 ttgtatttttcttatt  TA-rich tract