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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgagtttgcaattgcatgtggataagattaataggattggctttagtttgactagcagttctaactgcaacattggttttctgattgttgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGTATAGGCAGGAACTCTCATATCAAAAGGGCAATTATTGACAAGAATGCTC

Basic information

species Glycine max
transcript GLYMA14G01290.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0057g01480.t01 (Vitis vinifera), 3'ss of exon 7
-tgtgagtttgcaattgcatgtggataagattaataggattggctttagtttgactagcagttctaactgcaacattggttttctg--attgttgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGTATAGGCAGGAACTCTCATATCAAAAGGGCAATTATTGACAAGAATGCTC
 |||     ||     | || || ||    | ||| |   ||  | || | | |    |  | | |   |    ||||| ||| |   ||  |  ||||||||||||| ||||| | | |||||||    || ||||| ||||||||||||||||| || | ||||||||| |||||||| || || || |||||||||||||
atgttgaagtgttgg-ggatttgaattgtttcaattga--tgattatactctaatactctttgccattggggtaattggctttttataatcttcttgttccagACGGATGCTGACAGGCGGTTTCTAATGGCAAAAGGTAGTGTTCCAATTGGTATCGGTAAGAACTCTCACATCAAAAGAGCGATCATCGACAAGAATGCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494929|gb|EH223096.1|EH223096
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|209712746|gb|BW681600.1|BW681600
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|31472397|gb|CD414425.1|CD414425
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|22522873|gb|BU081684.1|BU081684
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCTAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|15287005|gb|BI470896.1|BI470896
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCTAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|10238679|gb|BE807567.1|BE807567
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCTAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|17518996|gb|BM188038.1|BM188038
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|31468241|gb|CD410269.1|CD410269
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|31461779|gb|CD403807.1|CD403807
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|192295337|gb|FG985991.1|FG985991
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|12772914|gb|BG237831.1|BG237831
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGA-TATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|51335512|gb|CO979378.1|CO979378
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|10232477|gb|BE801365.1|BE801365
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCTAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|5770728|gb|AI973902.1|AI973902
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGCCTGCTAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|7640498|gb|AW734799.1|AW734799
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCTAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
EST: gi|22929307|gb|BU546446.1|BU546446
EST:     AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAG                         ACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT
genomic: AAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt ... tgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtgagtttgcaattgcatgtggataagattaataggattggctttagtttgactagcagttctaactgcaacattggttttctgattgttgtgttccagACGGAGGCTGATAAGAGGTTTCTGGCTGCCAAAGGCAGTGTTCCAATTGGTATAGGCAGGAACTCTCATATCAAAAGGGCAATTATTGACAAGAATGCTC

- -gagtttg
- - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcaac