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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctaacatctgatttagaatggagaaacataactgtgtacataaccccctttttgttcattacattccgtgtatgtgtgtattgtgttgttacaggtatttggtcaactatttcctgaatgtaattttgctattttcatgtagGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGAATCTGTCAGACAATCCTACAAGAGTAAGTGTTGGTCAAGATTGGCGAGA

Basic information

species Glycine max
transcript GLYMA13G44940.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44940.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G73110.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagctaacatctgatttagaatggagaaacataactgtgtacataaccccctttttgttcattacattccgtgtatgtgtgtattgtgttgttacaggtatttggtcaactatttcctgaatgtaattttgctattttcatgtagGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGAATCTGTCAGACAATCCTACAAGAGTAAGTGTTGGTCAAGATTGGCGAGA
                                        ||| ||||         |||  |   ||       |     | | |||||    | |   |  |  |  ||   | || | | ||   |||||   | ||  | ||||| | || ||||||||||| ||||| || || |||||||| || || ||||||||  | || ||||||||||| |||||||| || ||||| ||| ||||
----------------------------------------gtaaataa---------tgtcaaccccagataactttgagctatgttgtgactctgcttttgatccgcaaagattatcataactgaggttttggc-tcttggtttagGGGAAACGCAAATGACAGTAAACAACCAGATAGTTGTTGGTACCCTGATGAATCTTGCGGATAATCCTACAAGGGTAAGTGTAGGACAAGAATGGAGAGA

upper sequence: GLYMA13G44940.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0018g01270.t01 (Vitis vinifera), 3'ss of exon 7
gtaagctaacatctgatttagaatggagaaacataactgtgtacataaccccctttttgttcattacattccgtgtatgtgtgtattgtgttgttacaggtatttggtcaactatttcctgaatgtaattttgctattttcatgtagGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGAATCTGTCAGACAATCCTACAAGAGTAAGTGTTGGTCAAGATTGGCGAGA
                                       ||| |   |     ||||| ||  |   |||   |   | | | |||| | || |||    | |||  |    |  |     ||||||  |||    || |  | |||| || |||||| ||||||||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||||| ||| |||| ||||||||||||||
--------------------------------------ttgttctctattttatttttattttt---attgttttcctttttttattttatttttatttttttttattt--tttatattgaaatgtatattt----ttctactatagGAAACACTCAAGTGACAGTCAACAATCAAATTGCTGTTGGGACTCTGATGAATTTGTCAGATAATCCTACAAGAGTCAGTATTGGACAAGATTGGCGAGA

upper sequence: GLYMA13G44940.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ34330 (Selaginella moellendorffii), 3'ss of exon 6
gtaagctaacatctgatttagaatggagaaacataactgtgtacataaccccctttttgttcattacattccgtgtatgtgtgtattgtgttgttacaggtatttggtcaactatttcctgaatgtaattttgctattttcatgtagGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGAATCTGTCAGACAATCCTACAAGAGTAAGTGTTGGTCAAGATTGGCGAGA
                                                                        ||      ||| |   |||||| |  || | ||       |||||           |||  ||       || ||  || || || |||||||| |||||||||||||| || || || || ||||| ||| | |||||||| |||  ||| || ||||||||||||||||| ||
------------------------------------------------------------------------gtaggcaagtgcaaattgttgtcaggggaagtt-------tattttt--------gtttgact--cacggtgcagAAAACACCCAGATGACAGTGAACAATCAAATTGTGGTGGGTACGCTGATGAACCTGGCCGACAATCCAACACAAGTTAGCGTTGGTCAAGATTGGCGGGA

upper sequence: GLYMA13G44940.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ31275 (Selaginella moellendorffii), 3'ss of exon 6
gtaagctaacatctgatttagaatggagaaacataactgtgtacataaccccctttttgttcattacattccgtgtatgtgtgtattgtgttgttacaggtatttggtcaactatttcctgaatgtaattttgctattttcatgtagGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGAATCTGTCAGACAATCCTACAAGAGTAAGTGTTGGTCAAGATTGGCGAGA
                                                                        ||      ||| |   |||||| |  || | ||       |||||        |  |||  ||       || ||  || || || |||||||| |||||||||||||| || || || || |||||  || | |||||||| |||  ||| || ||||||||||||||||| ||
------------------------------------------------------------------------gtaggcaagtgcaaattgttgtcaggggaagtt-------tattt--------tggtttgact--cacggtgcagAAAACACCCAGATGACAGTGAACAATCAAATTGTGGTGGGTACGCTGATGAACTTGGCCGACAATCCAACACAAGTTAGCGTTGGTCAAGATTGGCGGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5175439|gb|AI759772.1|AI759772
EST:     AATGAGCTGTTTGATGATCAATGATATTGATGCTGGCCTTGGTAGATTTG                         GGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGA
genomic: AATGAGCTGTTTGATGATCAATGATATTGATGCTGGCCTTGGTAGATTTGgtaagctaac ... tttcatgtagGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGA
EST: gi|51342164|gb|CO983425.1|CO983425
EST:     ATGAGCTGTTTGATGATCAATGATATTGATGCTGNNNNNNGTAGATTTG                         GGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGA
genomic: ATGAGCTGTTTGATGATCAATGATATTGATGCTGGCCTTGGTAGATTTGgtaagctaac ... tttcatgtagGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacaggtatttggtcaactatttcctgaatgtaattttgctattttcatgtagGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGAATCTGTCAGACAATCCTACAAGAGTAAGTGTTGGTCAAGATTGGCGAGA
                                         ctattttc  CT-rich tract
                                 taattttgctatttt  TA-rich tract