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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacttcatattctgattttatttatttatttatagatgaaaatgtaaaacttctcttgaaagccactgagatagtattcaagaatggcaaaatcaaattgattgctttctttttattcttatttaaatttaatcatcatttcatccatgttttatagACTCGGAAGTACTTGGATGCATGGTGTGTTTTCTTTTGGGCTACAACGCCAACACTCTTTTCTCTTTTCACATTTGGACTCTTTGCACTGATGGGACATG

Basic information

species Glycine max
transcript GLYMA13G44750.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44750.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0018g00310.t01 (Vitis vinifera), 3'ss of exon 6
gtaagacttcatattctgattttatttatttatttatagatgaaaatgtaaaacttctcttgaaagccactgagatagtattcaagaatggcaaaatcaaattgattgctttctttttattcttatttaaatttaatcatcatttcatccatgttttat-agACTCGGAAGTACTTGGATGCATGGTGTGTTTTCTTTTGGGCTACAACGCCAACACTCTTTTCTCTTTTCACATTTGGACTCTTTGCACTGATGGGACATG
                                              | | |||  |   ||  ||  ||  ||| |  ||      ||  | |   | ||  |  |    ||     |      ||| |   |  ||| | || |    | | |||||| |||| |||||||| || ||||| |||||||| ||||||||||| ||||| ||||| || || ||| | |||||||| || |||||| || |||||||| || 
---------------------------------------------gtatgaaatgtacttt--aattcatagagttcttac-----aacagtactgttaatatattcttctttcaaatgcctggattaatcgtccatccttatgtttctccttttttattagACACGGAAGTATTTAGATGCCTGGTGTGTATTCTTTTGGGCAACAACACCAACTCTTTTCTCTTTGTTCACATTCGGCCTCTTTACATTGATGGGATATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttctttttattcttatttaaatttaatcatcatttcatccatgttttatagACTCGGAAGTACTTGGATGCATGGTGTGTTTTCTTTTGGGCTACAACGCCAACACTCTTTTCTCTTTTCACATTTGGACTCTTTGCACTGATGGGACATG
                        atttaat  putative branch site (score: 4)
     tctttttattcttatt  TA-rich tract