1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...caaacatgctcaacacgtaccatctttgaattaagtagttctagctaactagttaattcatgtacattgtagtttacctttcttaatttcctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTTGTGGATCTTGTAAAGATTATTACAGACATTAACATTGCGGTTGAATCCGGAGAATTTGAC
species | Glycine max |
transcript | GLYMA13G44740.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTAGAGATAGCAACCCACATAACCATCTCTGATGACGGCCCAAAGCGAAG TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTTGTGGATCTTGTEST: gi|5509224|gb|AI855782.1|AI855782
genomic: GTAGAGATAGCAACCCACATAACCATCTCTGATGACGGCCCAAAGCGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTTGTGGATCTTGT
EST: GTAGAGATAGCAACCCACATAACCATCTCTGATGACGGCCCAAAGCGAAG TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTTGTGGATCTTGTEST: gi|151401888|gb|EV271701.1|EV271701
genomic: GTAGAGATAGCAACCCACATAACCATCTCTGATGACGGCCCAAAGCGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTTGTGGATCTTGT
EST: GTAGAGATAGCAACCCACATAACCATCTCTGATGACGGCCCAAAGCGAAG TTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTTGTGGATCTTGT
genomic: GTAGAGATAGCAACCCACATAACCATCTCTGATGACGGCCCAAAGCGAAGgtgatgcaaa ... ctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTTGTGGATCTTGT
taactagttaattcatgtacattgtagtttacctttcttaatttcctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTTGTGGATCTTGTAAAGATTATTACAGACATTAACATTGCGGTTGAATCCGGAGAATTTGAC
cctttcttaatttcct CT-rich tract
tttcttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaacatgctcaacacgtaccatctttgaattaagtagttctagctaactagttaattcatgtacattgtagtttacctttcttaatttcctgtttgcagTTTGTTGTATGTGGAGACAGCTGATCGGCCTGGATTACTTGTGGATCTTGTAAAGATTATTACAGACATTAACATTGCGGTTGAATCCGGAGAATTTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - catgctc
- - - - - - -cacgtac
- - - - - - - - - - - - - - - - - - - - - -gctaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtac