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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcattcaactacctattgattacaagcaatagtttccaatctaaaaagttggtatttatctaattgcatgcttgtatttgctttcagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG

Basic information

species Glycine max
transcript GLYMA13G42650.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42650.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g39310.3 (Oryza sativa), 3'ss of exon 6
------------gtatcatt-caactacctattgattacaagcaatagtt-tccaatctaaaaagttggtatttatctaattgcatgcttgtatttgctttcagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG
            ||   |         | ||||   |   |    |  || | || |     ||| |  |||  || | ||||  |  ||||          |||| |||||||||||||| |||||||| ||||| ||| |||||||||| || ||||||||  |||||
gtcagtttgttagtgctacaatgtgggcttattttctttgattcctgattcttcagtggtggaagatactata-atatcattgtgtctttgtcaacctgaatagGTTATGATGAGATTGTTCAGTCCACGTAAAACGACATTGTTGTTTGTTATTCGTGATAAATCAAAG

upper sequence: GLYMA13G42650.1 (Glycine max), 3'ss of exon 7
lower sequence: AC196426.3_FGT007 (Zea mays), 3'ss of exon 5
gtatcattcaactacctattgattacaagcaatagtttccaatctaaaaagttggtatttatctaattgcatgcttgtatt-tgctttcagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG
                                                      ||||||| ||       | |||   |  |   |  ||||||||||||| ||||| ||||| |||||||||||| |||||||||| |||||||| ||  ||| |
------------------------------------------------------gtatttaccttgggattttctttcttcatatgtgtagGTCATGATGAGGTTGTTCAGTCCTCGCAAAACAACATTGTTGTTTGTTATACGTGACAAATCAAGG

upper sequence: GLYMA13G42650.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G72960.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatcattcaactacctattgattacaagcaatagtttccaatctaaaaagttggtatttatctaa---ttgcatgcttgtatttgcttt---cagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG
||||  ||       ||   ||    ||  | |  ||    |||  |||| |   |  ||| |  |   ||| ||  ||| | |||  ||   ||||| |||||| |||||||||||||||| |||||||||||| ||||||| ||||| ||||| ||   |
gtattttttttgatgctcaggaagttaaaaactctttgtgtatcacaaaaatattttcttaccctaagtttgaatctttggagttgggtttggcagGTGATGATGCGATTGTTTAGTCCACGTAAAACAACAATGCTGTTTGTAATACGAGATAAAACCCGG

upper sequence: GLYMA13G42650.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 6
gtatcattcaactacctattgattacaagcaatagtttccaatctaaaaagttggtatttatctaattgcatgcttgtatttgctttcagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG
            || || || ||  |   ||||  ||   ||||| || || |   | || ||||| |  ||| |  ||| | ||| ||||| |||||| |||||||||||||||| ||||||||  || ||||||| || |||||||| |||| |
-----------gtatctctttat-gctgacaattattctgaatctcaagagctt-cagttgtctaactttatgatgttatatccttacagGTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccaatctaaaaagttggtatttatctaattgcatgcttgtatttgctttcagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG
                         atctaat  putative branch site (score: 3)
                                            tttgctttc  putative PPT
                    tatttatctaatt  TA-rich tract