Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttacactgcacctctttttcattaatggtctgaagtgtcctccctccatcttcctctctaacaattcttaactaatcttattcactagtcagatatcattgttactaaccttatatatctttgtttgtctcattgtgtgtttgaatcctttgcattttgcttgaaccaaattaatatgtactgtttgtgcagATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACATCCAGTGCTGCAATCCGGCAATCACTAAAGATTGCAGCCACAGCAAATG

Basic information

species Glycine max
transcript GLYMA13G42070.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27446371|gb|CA953494.1|CA953494
EST:     TAAAGGCCTACCCACG                         ATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACA
genomic: TAAAGGCCTACCCACGgtaagtttta ... gtttgtgcagATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACA
EST: gi|254314674|gb|GR829667.1|GR829667
EST:     AATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTACCCACG                         ATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACA
genomic: AATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTACCCACGgtaagtttta ... gtttgtgcagATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACA
EST: gi|31309192|gb|CD394395.1|CD394395
EST:     AATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTACCCACG                         ATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACA
genomic: AATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTACCCACGgtaagtttta ... gtttgtgcagATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACA
EST: gi|192307272|gb|FK002364.1|FK002364
EST:     AATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTACCCACG                         ATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACA
genomic: AATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTACCCACGgtaagtttta ... gtttgtgcagATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACA
EST: gi|192308624|gb|FG999719.1|FG999719
EST:     AATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTACCCACG                         ATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACA
genomic: AATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTACCCACGgtaagtttta ... gtttgtgcagATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgaatcctttgcattttgcttgaaccaaattaatatgtactgtttgtgcagATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACATCCAGTGCTGCAATCCGGCAATCACTAAAGATTGCAGCCACAGCAAATG
                               aattaat  putative branch site (score: 3)
                              aaattaatatgtact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttttacactgcacctctttttcattaatggtctgaagtgtcctccctccatcttcctctctaacaattcttaactaatcttattcactagtcagatatcattgttactaaccttatatatctttgtttgtctcattgtgtgtttgaatcctttgcattttgcttgaaccaaattaatatgtactgtttgtgcagATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACATCCAGTGCTGCAATCCGGCAATCACTAAAGATTGCAGCCACAGCAAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC