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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttattgtcttctattgattatagcaattcagaaatttctgtgatatcatttcctgtgcttttatttttctaatgtagatatttatgcctgagtgctagttttagtccgatcttttcagcagtgttaattaaatttcattcatattggttttactcaatttcttattttatttctcctttgtcagATCACGCCATATACAAAGGACGGAATTAATAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTCTGTGTAGGGGTCCGTATTGTTAAAAGGCTCAGTA

Basic information

species Glycine max
transcript GLYMA13G40320.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40320.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 10
gtgagtttattgtcttctattgattatagcaattcagaaatttctgtgatatcatttcctgtgcttttatttttctaatgtagatatttatgcctgagtgctagttttagtccgatcttttcagcagtgttaattaaatttcattcatattggttttactcaatttcttattttatttctcctttgtcagATCACGCCATATACAAAGGACGGAATTAATAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTCTGTGTAGGGGTCCGTATTGTTAAAAGGCTCAGTA
                                                                                  |||| || ||  |   | |   || || ||   ||| ||   |  |  ||  ||  |      |||  |    ||  | |||   |  ||||  ||     |  ||||||||| |||| ||| || || ||||||||||||||||||||||| || || |||||||| || |||||| |||||||  | ||||| ||  |||  | | 
---------------------------------------------------------------------------------cgatacttgtgttt---tacatattctactctcctctcttttactttacta--taggtgatgaacatgcttacatt-tttaat---tggttttggtttggtgtaatcagATCACACCATGTACCAAAGATGGAATTAATAAGATTTCCTTAACGGGATGCGATGCTCGTATTTTCTGTTTAGGGGTTAGAATTGTAAAGCGGCGAACTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttcattcatattggttttactcaatttcttattttatttctcctttgtcagATCACGCCATATACAAAGGACGGAATTAATAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTCTGTGTAGGGGTCCGTATTGTTAAAAGGCTCAGTA
                       ctcaatttcttatttt  CT-rich tract
                  ttttactcaatttctt  TA-rich tract