1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttttttctttttataaatatcaagggtttaaccacttgtgtaaacattaatgtttaaactttccaacatatttgatcaaataattttggaaaatgcagGTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAG
species | Glycine max |
transcript | GLYMA13G39210.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCGTGACCANNNGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTG GTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAGEST: gi|15200119|gb|BI424183.1|BI424183
genomic: CTCGTGACCATTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTGgtatgttttg ... gaaaatgcagGTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAG
EST: CTCGTGACCATTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTG GTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAGEST: gi|4396312|gb|AI495309.1|AI495309
genomic: CTCGTGACCATTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTGgtatgttttg ... gaaaatgcagGTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAG
EST: CTCGTGACCATTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTG GTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAGEST: gi|15813986|gb|BI786261.1|BI786261
genomic: CTCGTGACCATTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTGgtatgttttg ... gaaaatgcagGTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAG
EST: CTCGTGACCATTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTG GTACCACTTGTGGCTTCAEST: gi|209726298|gb|BW659611.1|BW659611
genomic: CTCGTGACCATTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTGgtatgttttg ... gaaaatgcagGTACCACTTGTGGCTTCA
EST: CTCGTGACCATTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTG GTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAGEST: gi|21887082|gb|BQ740295.1|BQ740295
genomic: CTCGTGACCATTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTGgtatgttttg ... gaaaatgcagGTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAG
EST: GAGTAATGCAAGGACATGCTGGGGCCAATTTG GTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAG
genomic: GAGTAATGCAAGGACATGCTGGGGCCAATTTGgtatgttttg ... gaaaatgcagGTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAG
acattaatgtttaaactttccaacatatttgatcaaataattttggaaaatgcagGTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAG
atatttgatcaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttttctttttataaatatcaagggtttaaccacttgtgtaaacattaatgtttaaactttccaacatatttgatcaaataattttggaaaatgcagGTACCACTTGTGGCTTCAAATAGGATAGGAAAGGAGATTATTGAGACTGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - -ccacttg