1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagtctacttgcttggtgcttgcctatgatatttctgtgtaggaaattcaatgatcttaaatgactgtcggggagcaaataattttgtatgctcctgtcatatcataatgtcattctatttcataccagtgacagattattattattattatcatcatcatcatcatcttatttttgttttatggctgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAATCATGACTTCCACGAGGTGTTTAATTATCATCTCGCTGGATGAATTGTT
species | Glycine max |
transcript | GLYMA13G39120.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGTTANNNCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAAEST: gi|21888986|gb|BQ742199.1|BQ742199
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAAEST: gi|254320228|gb|GR829416.1|GR829416
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAAEST: gi|58017836|gb|CX704578.1|CX704578
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAAEST: gi|209709702|gb|BW673970.1|BW673970
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAAEST: gi|58021116|gb|CX707858.1|CX707858
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAAEST: gi|254336780|gb|GR842959.1|GR842959
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAAEST: gi|21993793|gb|BQ785321.1|BQ785321
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAAEST: gi|9902607|gb|BE611638.1|BE611638
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAAEST: gi|7924338|gb|AW830364.1|AW830364
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAAEST: gi|254336779|gb|GR842958.1|GR842958
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
attattattatcatcatcatcatcatcttatttttgttttatggctgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAATCATGACTTCCACGAGGTGTTTAATTATCATCTCGCTGGATGAATTGTT
atcatcttatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtctacttgcttggtgcttgcctatgatatttctgtgtaggaaattcaatgatcttaaatgactgtcggggagcaaataattttgtatgctcctgtcatatcataatgtcattctatttcataccagtgacagattattattattattatcatcatcatcatcatcttatttttgttttatggctgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAATCATGACTTCCACGAGGTGTTTAATTATCATCTCGCTGGATGAATTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA