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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaaagtttctcaatctcaataatctaatctttaatgaggagtttgcaattgaaattgttgtattcttttaacttgttccacatgctaaccatcatccatggcttcatgttccatacatactaagtatgcatcatgtaatttctatcgaaatatttttcttagcatgtcctattcaatcctttttcagCGACACTGGGACAAACTCTAGTGAGACACCGATCAAAACCGCGTGTGTACATTGGATGCATGAAATCTGGGCCTGTTCTTTCTCAAAA

Basic information

species Glycine max
transcript GLYMA13G38500.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196082|gb|HO044473.1|HO044473
EST:     GGATGCTGACTTCTATATTAAAGTCGACGACGATGTTCATGTAAATATAG                         CGACACTGGGACAAACTCTAGTGAGACACCGATCAAAACCGCGTGTGTACA
genomic: GGATGCTGACTTCTATATTAAAGTCGACGACGATGTTCATGTAAATATAGgtatttaaag ... cctttttcagCGACACTGGGACAAACTCTAGTGAGACACCGATCAAAACCGCGTGTGTACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtaatttctatcgaaatatttttcttagcatgtcctattcaatcctttttcagCGACACTGGGACAAACTCTAGTGAGACACCGATCAAAACCGCGTGTGTACATTGGATGCATGAAATCTGGGCCTGTTCTTTCTCAAAA
                                       ttcaatcctttttc  CT-rich tract
               aaatatttttctta  TA-rich tract