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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatattgtgttttattgaatatccattctttttaaatgaaagatagtgcaacttagtacatattatttgctgatgacatccattatgttgttattatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTGAGGTATTGTAAGCAGCACGGTGACGGGACTTGGGCAGTAG

Basic information

species Glycine max
transcript GLYMA13G38430.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38430.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0059g02310.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------gtatatattgtgttttattgaatatccattctttttaaatgaaagatagtgcaacttagtacatattatttgctga---tgacatccattatgttgttattatg----cagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTGAGGTATTGTAAGCAGCACGGTGACGGGACTTGGGCAGTAG
                                         |  | ||    | ||     |  |||||        ||   ||| | | |  | |  |  | || |  | |    |   |    |  | ||  |  || || |     ||||||||||| ||| | ||||||||||||||||| || || ||| ||||||| || ||||||||||| ||||||||||| | ||| || ||||||||||| |
gtaattataaaatagaacttgaatgtttttccgcaatcatcgcttgtaacaagcttag--aaggatccaggaaaacaaagaaaaaaaaaattaatcccaacatatgtactcttaaaagatttgtttttaatacatacttgttttatttccagATGACAGCTGAATTCCAAGTACCTTCACCTCTAGTTCCTACTAGAGAGAGTTACTTTGTGAGGTACTGTAAGCAGCATGCTGATGGAACTTGGGCAGTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaacttagtacatattatttgctgatgacatccattatgttgttattatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTGAGGTATTGTAAGCAGCACGGTGACGGGACTTGGGCAGTAG
                     tgctgat  putative branch site (score: 3)
      ttagtacatattattt  TA-rich tract