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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttacatactttctacttgtgctcattcattctacactaagttctcttatcctttttcccattctttccaagcaggtgcacattctcttttgcgtttatgctgcagTTGCTCCTCCAATTATCTTCAAAGGGAAATCTCTCACGTGAGTCCCTTTTTAAAACTGCATTCCTTTTATTTAATCTGCTACCTGGC

Basic information

species Glycine max
transcript GLYMA13G37590.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G37590.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 8
--------------gtaagttttacatactt----tctacttgtgct-cattcattctaca---ctaagttctcttatcctttttccc--attctttccaagcaggtgcacattctcttttgcgtttatgctgcagTTGCTCCTCCAATTATCTTCAAAGGGAAATCTCTCACGTGAGTCCCTTTTTAAAACTGCATTCCTTTTATTTAATCTGCTACCTGGC
              ||   ||||    |  |    |  |||||   |  |    |||| ||       ||   || ||  ||||| ||   || | |||| |||| | || |||  ||| ||| | | |||| ||||||||||||||||| | ||||| ||||| ||||||||                                                  
gtaagctgttttatgttctttttgtggatctggctttcacttgcaatgtagatgttctgcaaattgtggtcacctcattttttttgccttgttttctccatgcagCTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTCAAGGGGAAGTCTCTCAC--------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttcccattctttccaagcaggtgcacattctcttttgcgtttatgctgcagTTGCTCCTCCAATTATCTTCAAAGGGAAATCTCTCACGTGAGTCCCTTTTTAAAACTGCATTCCTTTTATTTAATCTGCTACCTGGC
                               ttctcttttgcgttt  CT-rich tract
         attcttt  TA-rich tract