Sequence
atgc intronic sequence ATGC exonic sequence...tttaatatttaaaacaaaaataactgctaaatattttagatatatttttattataaaaaatagttcactgttatcgataacaaattcttaattgcggcagAGTTTTGGAAACAGGTTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCCGAGACAAACTGTATAACACACGGGAACGTGCTCGCCAATTATT
Basic information
species | Glycine max |
transcript | GLYMA13G36670.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G36670.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G473001_T01 (Zea mays), 3'ss of exon 6
tttaatatttaaaacaaaaataactgctaaatattttagatatatttttattataaaaaatagtt--cactgttatcgataacaaattcttaattgcggcagAGTTTTGGAAACAGGTTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCCGAGACAAACTGTATAACACACGGGAACGTGCTCGCCAATTATT
| || ||| | || | || || | | || || ||||||| | || || || ||| || | ||| | | | | |||||||||||| ||||||||||||||||||||||||| || || || |||||||| | || |||||||| ||||| || ||||| | || | | ||
gtagctaccagtgacatcattaggt-cttcttaatgatggcatgttgttattatgccatatttttggcattgtaatgatttttc--ttcatttctactgtagAGTTTTGGAAGAAGGTTCCTCCAAATGAGCCATATCGGGTGATACTGAGTGATGTCAGGGATAAACTGTACAACACTCGTGAACGGTCACGAGAGCTTTT
upper sequence: GLYMA13G36670.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G110714_T01 (Zea mays), 3'ss of exon 6
-tttaatatttaaaacaaaaataactgctaaatattttagatatatttttattataaaaaatagttcactgttatcgataacaaattcttaattgcggcagAGTTTTGGAAACAGGTTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCCGAGACAAACTGTATAACACACGGGAACGTGCTCGCCAATTATT
||||||| | || || | | |||| || || | | | | | | || | ||| || | || | | |||||||| ||||| || || ||||| | ||| || || ||||| ||||| |||||||| |||| ||||| ||||||||||| ||||| || || || |||||
tgataatattgatgcatgttatttttgtatactcctttatattaatgcagccatttagacaaaactaggtgaagttaata-catgctattcctggatgcagAGTTCTGGAAGCAAGTCCCTCCCAGTGAACCTTACCGTGTGATTCTGAGTGATGTCAGAGATAAACTCTATAACACACGTGAACGAGCACGTCACTTATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttattataaaaaatagttcactgttatcgataacaaattcttaattgcggcagAGTTTTGGAAACAGGTTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCCGAGACAAACTGTATAACACACGGGAACGTGCTCGCCAATTATT
tcttaat putative branch site (score: 3)
ttataaaaaatagttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttaatatttaaaacaaaaataactgctaaatattttagatatatttttattataaaaaatagttcactgttatcgataacaaattcttaattgcggcagAGTTTTGGAAACAGGTTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCCGAGACAAACTGTATAACACACGGGAACGTGCTCGCCAATTATT
- - - - - - - - aaaataa
- - - - - - - - - - - -ctgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat