1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagaacctttctttatcctttctttttaaattgttttccaaggtggatggatataatgagtttattttgtgtatcagGTCGGCTTTCGGGTGTTATGGATGATAGAGGGAAATTTATTTACATCTCCCAAGAAGAGATGAAAGCCGTTGCTGATTATATTAAGCGGCAAGGGAGGGT
species | Glycine max |
transcript | GLYMA13G36410.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAATGTATCAATCGCATCACATCTCTGGAAAGTATGG GTCG-CTTTCGGGTGTEST: gi|193365348|gb|FK329755.1|FK329755
genomic: GAATGTATCAATCGCATCACATCTCTGGAAAGTATGGgtaagaacct ... tgtgtatcagGTCGGCTTTCGGGTGT
EST: GAATGTATCAATCGCATCACATCTCTGGAAAGTATGG GTCGGCTTTCGGGTGTTATGGATGATAGAGGGAAATTTATTTACATCTCCCEST: gi|51335568|gb|CO979434.1|CO979434
genomic: GAATGTATCAATCGCATCACATCTCTGGAAAGTATGGgtaagaacct ... tgtgtatcagGTCGGCTTTCGGGTGTTATGGATGATAGAGGGAAATTTATTTACATCTCCC
EST: GAATGTATCAATCGCATCACATCTCTGGAAAGTATGG GTCGGCTTTCGGGTGTTATGGATGATAGAGGGAAATTTATTTACATCTCCCEST: gi|193496266|gb|FK463322.1|FK463322
genomic: GAATGTATCAATCGCATCACATCTCTGGAAAGTATGGgtaagaacct ... tgtgtatcagGTCGGCTTTCGGGTGTTATGGATGATAGAGGGAAATTTATTTACATCTCCC
EST: GAATGTATCAATCGCATCACATCTCTGGAAAGTATGG GTCGGCTTTCGGGTGTTATGGATGATAGAGGGAAATTTATTTTACATCTCC
genomic: GAATGTATCAATCGCATCACATCTCTGGAAAGTATGGgtaagaacct ... tgtgtatcagGTCGGCTTTCGGGTGTTATGGATGATAGAGGGAAATTTATTT-ACATCTCC
tttttaaattgttttccaaggtggatggatataatgagtttattttgtgtatcagGTCGGCTTTCGGGTGTTATGGATGATAGAGGGAAATTTATTTACATCTCCCAAGAAGAGATGAAAGCCGTTGCTGATTATATTAAGCGGCAAGGGAGGGT
tttatttt CT-rich tract
atataatgagtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacctttctttatcctttctttttaaattgttttccaaggtggatggatataatgagtttattttgtgtatcagGTCGGCTTTCGGGTGTTATGGATGATAGAGGGAAATTTATTTACATCTCCCAAGAAGAGATGAAAGCCGTTGCTGATTATATTAAGCGGCAAGGGAGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT