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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaacagttcatttttggtacatatcattgatctttttctaatttctaattctagtgatacctaatttcagGTTTACACTGCTTCAGTGCATATAAATTATGTTGACTGTAATAGGTGGTTGGGTGATTTTATCCTCTCAAAG

Basic information

species Glycine max
transcript GLYMA13G36310.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G36310.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G20740.1 (Arabidopsis thaliana), 3'ss of exon 7
-------gtaagcaacagttcatttttggtaca-----tatcattgatctttttctaat-----ttctaattctagtgatacctaatttcagGTTTACACTGCTTCAGTGCATATAAATTATGTTGACTGTAATAGGTGGTTGGGTGATTTTATCCTCTCAAAG
        |  |    ||     | |||  |||     |  |||  |  | ||  | ||     || ||| |    | |   |||  |  |||| |  || |||||  | |||| ||||||||| || |||||  | ||||| |||||||||||||||||||||
gtaagtattttgttttagccttgtcttgtaacaacaagtgacatacaaatattggtgatggcctttgtaaataacattacttctatatgtagGTATTTACAGCTTCCATTCATACAAATTATGTAGATTGTAACCGTTGGTTTGGTGATTTTATCCTCTCAAAG

upper sequence: GLYMA13G36310.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv19s0014g05210.t01 (Vitis vinifera), 3'ss of exon 7
gtaagcaacagttcatttt-tggtacatatcat-tgatctttttctaatttctaattctagtgataccta----atttcagGTTTACACTGCTTCAGTGCATATAAATTATGTTGACTGTAATAGGTGGTTGGGTGATTTTATCCTCTCAAAG
|| || | | ||   |||| |  ||||| |||| |||   | |  |  | | |   |||   | ||| |     ||| ||||| | ||  || || || |||  ||| ||||||||||||||||||||| |||||||||||||||| || |||
gtgagtagctgtcatttttattttacatgtcatgtgagtgtgtgttcctatttgtctctgaggttacttttattattgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8828002|gb|BE211732.1|BE211732
EST:     CATGGACAGATCTTCCTTCCAAGTTTCCAACAAAATTTGTCCAGTTTCCT                         GTTTACACTGCTTCAGTGCATATAAATTATGTTGACTGTAATACGTGGTTG
genomic: CATGGACAGATCTTCCTTCCAAGTTTCCAACAAAATTTGTCCAGTTTCCTgtaagcaaca ... ctaatttcagGTTTACACTGCTTCAGTGCATATAAATTATGTTGACTGTAATAGGTGGTTG
EST: gi|208097986|gb|GD895513.1|GD895513
EST:     CATGGACAGATCTTCCTTCCAAGTTTCCAACAAAATTTGTCCAGTTTCCT                         GTTTACACTGCTTCAGTGCATATAAATTA
genomic: CATGGACAGATCTTCCTTCCAAGTTTCCAACAAAATTTGTCCAGTTTCCTgtaagcaaca ... ctaatttcagGTTTACACTGCTTCAGTGCATATAAATTA
EST: gi|193588367|gb|FK544074.1|FK544074
EST:     CATGGACAGATCTTCCTTCCAAGTTTCCAACAAAATTTGTCCAGTTTCCT                         GTTTACACTGCTTCAGTGCATATAAATTATGTTGACTGTAATAGGTGGTTG
genomic: CATGGACAGATCTTCCTTCCAAGTTTCCAACAAAATTTGTCCAGTTTCCTgtaagcaaca ... ctaatttcagGTTTACACTGCTTCAGTGCATATAAATTATGTTGACTGTAATAGGTGGTTG
EST: gi|207751088|gb|GD725307.1|GD725307
EST:     CATGGACAGATCTTCCTTCCAAGTTTCCAACAAAATTTGTCCAGTTTCCT                         GTTTACACTGCTTCAGTGCATATAAATTA
genomic: CATGGACAGATCTTCCTTCCAAGTTTCCAACAAAATTTGTCCAGTTTCCTgtaagcaaca ... ctaatttcagGTTTACACTGCTTCAGTGCATATAAATTA
EST: gi|193586867|gb|FK540797.1|FK540797
EST:     CATGGACAGATCTTCCTTCCAAGTTTCCAACAAAATTCGTCCAGTTTCCT                         GTTTACACTGCTTCAGTGCATATAAATTA
genomic: CATGGACAGATCTTCCTTCCAAGTTTCCAACAAAATTTGTCCAGTTTCCTgtaagcaaca ... ctaatttcagGTTTACACTGCTTCAGTGCATATAAATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtacatatcattgatctttttctaatttctaattctagtgatacctaatttcagGTTTACACTGCTTCAGTGCATATAAATTATGTTGACTGTAATAGGTGGTTGGGTGATTTTATCCTCTCAAAG
              atctttttctaatttc  TA-rich tract