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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgagataagattgtatattgtacaagtcttctttattatataatgctatatttggatttttcagccatttgttagacaacctatttttttattttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACATCAAACGTGGGATAGAGGCTGATGGTATTGAGGCACTTTACAAGAAGG

Basic information

species Glycine max
transcript GLYMA13G35580.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192320801|gb|FK013891.1|FK013891
EST:     GGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: GGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|254349356|gb|GR860154.1|GR860154
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|192320800|gb|FK013890.1|FK013890
EST:     GGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: GGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|31469251|gb|CD411279.1|CD411279
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|31466939|gb|CD408967.1|CD408967
EST:     AGGTTCATCGCAAATATGTTTTTGTTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|17963769|gb|BM270514.1|BM270514
EST:     CTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: CTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|31311375|gb|CD396578.1|CD396578
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|7926602|gb|AW832628.1|AW832628
EST:     AAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|254328306|gb|GR835271.1|GR835271
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|7925127|gb|AW831153.1|AW831153
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|208200432|gb|GD996907.1|GD996907
EST:     TGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: TGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|209710635|gb|BW671007.1|BW671007
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|31471703|gb|CD413731.1|CD413731
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|31475642|gb|CD417670.1|CD417670
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGNCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatttggatttttcagccatttgttagacaacctatttttttattttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACATCAAACGTGGGATAGAGGCTGATGGTATTGAGGCACTTTACAAGAAGG
                                 cctatttttttatttt  CT-rich tract
 aacctatttttttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcatgagataagattgtatattgtacaagtcttctttattatataatgctatatttggatttttcagccatttgttagacaacctatttttttattttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACATCAAACGTGGGATAGAGGCTGATGGTATTGAGGCACTTTACAAGAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG