1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgagaagctgttttatgggttcctgacaatgtgtcatagggtacttaaagaaactaaggctgctgtgctgcctaaatttgcatgttcctttgtgttgcagATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTTTCATCCCAGATTATGTGGGACAAGTTCGATGGATTGACGATGGATTCCG
species | Glycine max |
transcript | GLYMA13G34570.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACA ATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCAEST: gi|19053815|gb|BM732482.1|BM732482
genomic: CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAgtaagtcaaa ... tgtgttgcagATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCA
EST: CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACA ATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTTEST: gi|51342060|gb|CO983327.1|CO983327
genomic: CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAgtaagtcaaa ... tgtgttgcagATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTT
EST: CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACA ATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTTEST: gi|7926538|gb|AW832564.1|AW832564
genomic: CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAgtaagtcaaa ... tgtgttgcagATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTT
EST: CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACA ATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTT
genomic: CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAgtaagtcaaa ... tgtgttgcagATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTT
taaagaaactaaggctgctgtgctgcctaaatttgcatgttcctttgtgttgcagATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTTTCATCCCAGATTATGTGGGACAAGTTCGATGGATTGACGATGGATTCCG
gcctaaa putative branch site (score: 3)
tgttccttt putative PPT
taaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagaagctgttttatgggttcctgacaatgtgtcatagggtacttaaagaaactaaggctgctgtgctgcctaaatttgcatgttcctttgtgttgcagATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTTTCATCCCAGATTATGTGGGACAAGTTCGATGGATTGACGATGGATTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA