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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atacagtactataaccagtataacgagaaaacatgggaattttgaaagtctaggccattttgggcattcgtatattgatttttgttcattcttgaaaaagACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTTAATCGGATTGGAATTGGTGCCAAGTACTCTACTCCAAAGGATCCCCTGA

Basic information

species Glycine max
transcript GLYMA13G33920.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404895|gb|EV274709.1|EV274709
EST:     GAGGTGGGGCTTCCAAGTCAGATGGCTAGGTTTTCCAAG                         ACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTT
genomic: GAGGTGGGACTTCCAAGTCAGATGGCTAGGTTTTCCAAGgttattgctt ... cttgaaaaagACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTT
EST: gi|17519618|gb|BM188660.1|BM188660
EST:     GAGGTGGGACTTCCAAGTCAGATGGCTAGGTTTTCCAAG                         ACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTT
genomic: GAGGTGGGACTTCCAAGTCAGATGGCTAGGTTTTCCAAGgttattgctt ... cttgaaaaagACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTT
EST: gi|151397360|gb|EV267233.1|EV267233
EST:     GAGGTGGGACTTCCAAGTCAGATGGCTAGGTTTTCCAAG                         ACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTT
genomic: GAGGTGGGACTTCCAAGTCAGATGGCTAGGTTTTCCAAGgttattgctt ... cttgaaaaagACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTT
EST: gi|10845804|gb|BF068846.1|BF068846
EST:     GAGGTGGGACTTCCAAGTCAGATGGCTAGGTTTTCCAAG                         ACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTT
genomic: GAGGTGGGACTTCCAAGTCAGATGGCTAGGTTTTCCAAGgttattgctt ... cttgaaaaagACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTT
EST: gi|192294635|gb|FG986484.1|FG986484
EST:     GAGGTGGGACTTCCAAGTCAGATGGCTAGGTTTTCCAAG                         ACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTT
genomic: GAGGTGGGACTTCCAAGTCAGATGGCTAGGTTTTCCAAGgttattgctt ... cttgaaaaagACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtctaggccattttgggcattcgtatattgatttttgttcattcttgaaaaagACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTTAATCGGATTGGAATTGGTGCCAAGTACTCTACTCCAAAGGATCCCCTGA
                           tattgat  putative branch site (score: 3)
                                 tttttgttcattctt  CT-rich tract
                         tatattgatttttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atacagtactataaccagtataacgagaaaacatgggaattttgaaagtctaggccattttgggcattcgtatattgatttttgttcattcttgaaaaagACAATTACAGCAATCTCAAGACAACAGAGGGAGATAAAGAGTGGATTTCTTAATCGGATTGGAATTGGTGCCAAGTACTCTACTCCAAAGGATCCCCTGA

- - - - - - - - - - - - - - - acatggg
- - - - - - - - - - - - - - - - - - - - - - - - -ctaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattcg