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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggtatgataattgtattgtaacttgttcagGTATAAATCTTAAATCACTAGTAGATGCAGCTGAGAGTTATCAAATAGTTCTTGCAGAAAATCGAAAATTGTTCAATGAAGTTCAAGAATTAAAAG

Basic information

species Glycine max
transcript GLYMA13G33390.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G33390.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 3'ss of exon 11
-------------------------------------gtaaggtatgataattgtattgt---aacttgttcagGTATAAATCTTAAATCACTAGTAGATGCAGCTGAGAGTTATCAAATAGTTCTTGCAGAAAATCGAAAATTGTTCAATGAAGTTCAAGAATTAAAAG
                                     |||   | | | | |||| |||    ||||| | ||||      | | || |   | || ||||| ||||| |  || || | ||||||||| ||||||| ||| |||||||||||||| |||||| ||||||
gtatgtgttgtataatctataaagtaaacatttacttgtatattttaaca-ttgtgttgcttaaacttttgcagGCTCTGGTTTAAAGTGTTTGGTTGATGCTGCTGAAAACTACCACAAAGTTCTTGCTGAAAATCAAAAGTTGTTCAATGAAGTGCAAGAACTAAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaggtatgataattgtattgtaacttgttcagGTATAAATCTTAAATCACTAGTAGATGCAGCTGAGAGTTATCAAATAGTTCTTGCAGAAAATCGAAAATTGTTCAATGAAGTTCAAGAATTAAAAG
                                        ttgtaac  putative branch site (score: 2)
                                              cttgttc  CT-rich tract
                           tatgataattgtatt  TA-rich tract