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gtttgccttgagatatttttatgtcaaactttgtacttttgcattcacaatgaaagagagaagaattcacatttatttttgtacaaacttaaggctatgttaacttgaaactctgaagtaaatacttttctttgctatacttgacacttagatattttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTGCATGGGGTTGATTTGGAGCCTGCCATTAACAATGCTGTTTTTCCTGGTC
species | Glycine max |
transcript | GLYMA13G29410.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGEST: gi|254335574|gb|GR847102.1|GR847102
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAG
EST: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTGEST: gi|298195468|gb|HO043859.1|HO043859
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTGEST: gi|298190143|gb|HO032264.1|HO032264
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCA
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCA
ctctgaagtaaatacttttctttgctatacttgacacttagatattttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTGCATGGGGTTGATTTGGAGCCTGCCATTAACAATGCTGTTTTTCCTGGTC
acttgac putative branch site (score: 4)
tattttcttcc putative PPT
taaatacttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgccttgagatatttttatgtcaaactttgtacttttgcattcacaatgaaagagagaagaattcacatttatttttgtacaaacttaaggctatgttaacttgaaactctgaagtaaatacttttctttgctatacttgacacttagatattttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTGCATGGGGTTGATTTGGAGCCTGCCATTAACAATGCTGTTTTTCCTGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT