Sequence
atgc intronic sequence ATGC exonic sequence...tccaaaattgtaataattttaccaagaatttcttgtttgtaattttctgtatatgtgtgtgtagaaaactaaattaattaaactatttattcttcttcagCTGGAAACATGCGTCATCTGATAGTTGAGGCTTGTATTGCCCGCAATCTACTGGACACATCCGCATACCTATGGCCAGGTTATGTAAACGGACGTATCAA
Basic information
species | Glycine max |
transcript | GLYMA13G28070.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G28070.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G23590.1 (Arabidopsis thaliana), 3'ss of exon 6
----------------------------------------tccaaaattgtaataattttaccaagaatttcttgtttgtaattttctgtatatgtgtgtgtagaaaactaaattaat---taaactatttattcttctt----cagCTGGAAACATGCGTCATCTGATAGTTGAGGCTTGTATTGCCCGCAATCTACTGGACACATCCGCATACCTATGGCCAGGTTATGTAAACGGACGTATCAA
|||| | | | | || ||| | | ||| ||| || ||| | | | || | ||| || || | | | | ||||||||||||||| || |||||||| |||||||||||||| | || ||||||| | || || || ||||| || ||||| || || || |||||
gtaagtttaataaaatttcgctctattgaattgaagttaaaccaatttgtttgtcttcgtattcttcattattgtcgcttgattgtcttcatttgttgattttatgggcctctttcgtgcctaacatactttatgtacatgccgtagCTGGAAACATGCGCCACCTGATAGTCGAGGCTTGTATTGCAAGAAACATACTGGATATGTCGGCTTATTCGTGGCCTGGCTATGTTAATGGCCGAATCAA
upper sequence: GLYMA13G28070.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 6
tccaaaattgtaata-attttaccaagaatttcttgtttgtaattttctgtatatgtgtgtgtagaaaactaaattaattaaactatttattcttctt--cagCTGGAAACATGCGTCATCTGATAGTTGAGGCTTGTATTGCCCGCAATCTACTGGACACATCCGCATACCTATGGCCAGGTTATGTAAACGGACGTATCAA
|| || | || || ||| | || || | | | | | | || ||| | | | | ||| ||| || |||||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||||||||| ||||| | |||||||| ||||| || ||||| |||||
---aaggttacgctgcatgttgtttttgcttttggatcagtgtttctgtttgtggtattattaagtttcttaatcctagtccatcttgtatccttgtttgcagCTGGAAACATGCGCCATCTAATAGTTGAGGCTTGTATTGCCAGAAATCTGTTGGACACATCAGCATATTTCTGGCCAGGCTATGTGAATGGACGCATCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgtatatgtgtgtgtagaaaactaaattaattaaactatttattcttcttcagCTGGAAACATGCGTCATCTGATAGTTGAGGCTTGTATTGCCCGCAATCTACTGGACACATCCGCATACCTATGGCCAGGTTATGTAAACGGACGTATCAA
ctatttattcttcttc CT-rich tract
tagaaaactaaattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tccaaaattgtaataattttaccaagaatttcttgtttgtaattttctgtatatgtgtgtgtagaaaactaaattaattaaactatttattcttcttcagCTGGAAACATGCGTCATCTGATAGTTGAGGCTTGTATTGCCCGCAATCTACTGGACACATCCGCATACCTATGGCCAGGTTATGTAAACGGACGTATCAA
-ccaaaat
- - - - - - - - - - -ccaagaa
- - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgtg