1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caaggtttaacccaagttgtaacattagttttgttatgtcagtgtctgttgatctttacacgtgttgtggctatattttattttgaactctgtatgacagGAATCAGATTTAGAATCCTTTTGCAATCATTGCGGTCTTGAGACTGGTACAGATGAATCTGGAAATAAGCTACTTCCCACAAAGCAAACTACATTCAGTC
species | Glycine max |
transcript | GLYMA13G25740.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCATCCATATCCTCTGTTGGATCTTTCAAAACTCCTGTTCATAAAG GAATCAGATTTAGAATCCTTTTGCAATCATTGCGGTCTTGAGACTGGTACAEST: gi|214006736|gb|DB987618.1|DB987618
genomic: AGCTTCATCCATATCCTCTGTTGGATCTTTCAAAACTCCTGTTCATAAAGgtatggatta ... tgtatgacagGAATCAGATTTAGAATCCTTTTGCAATCATTGCGGTCTTGAGACTGGTACA
EST: TGGATCTTTCAAAACTCCTGTTCATAAAG GAATCAGATTTAGAATCCTTTTGCAATCATTGCGGTCTTGAGACTGGTACAEST: gi|19270700|gb|BM886956.1|BM886956
genomic: TGGATCTTTCAAAACTCCTGTTCATAAAGgtatggatta ... tgtatgacagGAATCAGATTTAGAATCCTTTTGCAATCATTGCGGTCTTGAGACTGGTACA
EST: AGCTTCATCCATATCCTCTGTTGGATCTTTCAAAACTCCTGTTCATAAAG GAATCAGATTTAGAATCCTTTTGCAATCATTGCGGTCTTGAGACTGGTACAEST: gi|254324920|gb|GR834345.1|GR834345
genomic: AGCTTCATCCATATCCTCTGTTGGATCTTTCAAAACTCCTGTTCATAAAGgtatggatta ... tgtatgacagGAATCAGATTTAGAATCCTTTTGCAATCATTGCGGTCTTGAGACTGGTACA
EST: AGCTTCATCCATATCCTCTGTTGGATCTTTCAAAACTCCTGTTCATAAAG GAATCAGATTTAGAATCCTTTTTGCAATCA-TGCGGTCTTGAGACTGGTACEST: gi|208312132|gb|GE109900.1|GE109900
genomic: AGCTTCATCCATATCCTCTGTTGGATCTTTCAAAACTCCTGTTCATAAAGgtatggatta ... tgtatgacagGAATCAGATTTAGAATCC-TTTTGCAATCATTGCGGTCTTGAGACTGGTAC
EST: AGCTTCATCCATATCCTCTGTTGGATCTTTCAAAACTCCTGTTCATAAAG GAATCAGATTTAGAATCCTTTTGCAATCATTG
genomic: AGCTTCATCCATATCCTCTGTTGGATCTTTCAAAACTCCTGTTCATAAAGgtatggatta ... tgtatgacagGAATCAGATTTAGAATCCTTTTGCAATCATTG
ctgttgatctttacacgtgttgtggctatattttattttgaactctgtatgacagGAATCAGATTTAGAATCCTTTTGCAATCATTGCGGTCTTGAGACTGGTACAGATGAATCTGGAAATAAGCTACTTCCCACAAAGCAAACTACATTCAGTC
tgttgat putative branch site (score: 4)
tatattttattttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaggtttaacccaagttgtaacattagttttgttatgtcagtgtctgttgatctttacacgtgttgtggctatattttattttgaactctgtatgacagGAATCAGATTTAGAATCCTTTTGCAATCATTGCGGTCTTGAGACTGGTACAGATGAATCTGGAAATAAGCTACTTCCCACAAAGCAAACTACATTCAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - aacccaa
- - - - - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - - - -gtgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtgg