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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtagaactgccttcctgtatttatctaggatgagttgcacctgtttcattgtttttttaaaaacttgtttcaaatgctgcagATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACCTCTTTACTTGTCTTTGGTTCAATGAAGTTGACCGATTTACTTCAAGGGA

Basic information

species Glycine max
transcript GLYMA13G24770.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24770.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G28240.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaggtagaactgccttcctgtatttatctaggatgagttgcacctgttt---cattgtttttttaaaaacttgttt---caaatgctgcagATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACCTCTTTACTTGTCTTTGGTTCAATGAAGTTGACCGATTTACTTCAAGGGA
    |||   ||   |  ||   | | ||||  ||    |   |  | |    || |  |  | || | |  | | |          |||||| || || || || ||||| ||  || ||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||
----gtatgtctctttagcttattctgtctaaaatccccttttcgggatcaaacactaataatatagacaactatatggttgggctatgcagACGTACCCGAGGGTTGTGTCATTTTAAGAGAGCATGTTCCCATAAGCAACCTCTTCACTTGTCTTTGGTTCAACGAAGTTGACCGATTCACTTCTAGAGA

upper sequence: GLYMA13G24770.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 7
gtaggtagaactgccttcctgtatttatctaggatgagttgcacctgtttcattgtttttttaaaaacttg-tttcaaatg----ctgcagATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACCTCTTTACTTGTCTTTGGTTCAATGAAGTTGACCGATTTACTTCAAGGGA
||||||  ||   | ||| | | ||| | |    |  |||  | ||||| |||  ||  || |      || |||||         ||||||||| |||||||| || ||||| ||| | || ||  |||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||
gtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttcatgctgggtttgcagATGTGCCTGAAGGGTGCGTGATTGTAAGGGAACACATTCCTATTAGCAACCTATTTACTTGCCTTTGGTTCAACGAAGTTGACCGTTTTACTTCCAGGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296527|gb|FG991633.1|FG991633
EST:     GAATGAGGGATTGACACCATACACAGAGGCTAAGCTTCCTCTTATAAGTG                         ATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACC
genomic: GAATGAGGGATTGACACCATACACAGAGGCTAAGCTTCCTCTTATAAGTGgtaggtagaa ... aatgctgcagATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatgagttgcacctgtttcattgtttttttaaaaacttgtttcaaatgctgcagATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACCTCTTTACTTGTCTTTGGTTCAATGAAGTTGACCGATTTACTTCAAGGGA
                    attgtttttttaaaaa  TA-rich tract