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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatctcctatgctagatatacacttctaaatttgtttgaatttctgatttccatgaaattacttttatgtcttcaactcttcatactatactgactattgctctttcatattattattaaataactctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTAATTGTGTGTATACCACCTGCCGTAATT

Basic information

species Glycine max
transcript GLYMA13G24360.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24360.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 7
gttatctcctatgctagatatacacttctaaatttgtttgaatttctgatttccatgaaattacttttatgtcttcaactcttcatacta--tactgactattgctctttcata------ttattattaaataactc--tttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTAATTGTGTGTATACCACCTGCCGTAATT
||||||| |||| |      | | |||     ||| ||    |||||| | |  |  |||  ||   || ||    |   ||| | |  |  || |  |   ||  | |  | |       |  || | ||| | |   ||| |||||||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||| || || ||||| ||  | |||
gttatcttctattc------tgctcttgactgttttttcttttttctggtcttgaataaaacacacataggtggcaatagcttgagaagagctattttcctctgtacctcaaaaattctccttctaatgaatgaatgggtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5753077|gb|AI960364.1|AI960364
EST:     TTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7588731|gb|AW704520.1|AW704520
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|26269191|gb|CA820254.1|CA820254
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|26056377|gb|CA799291.1|CA799291
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACCGTACCCATATCTATGCCTACATTTCCCTCCTTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|20498046|gb|BQ272976.1|BQ272976
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|22524479|gb|BU083290.1|BU083290
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTTCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|16995981|gb|BM085353.1|BM085353
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|10845918|gb|BF068938.1|BF068938
EST:     TATCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATCGACAGTACCAATCTCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|120530166|gb|EH258300.1|EH258300
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACA
EST: gi|22524864|gb|BU083675.1|BU083675
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|6134862|gb|AW133255.1|AW133255
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|22524883|gb|BU083694.1|BU083694
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|193628825|gb|FK577661.1|FK577661
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|22540054|gb|BU089897.1|BU089897
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|17964192|gb|BM270931.1|BM270931
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|13481992|gb|BG511335.1|BG511335
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCT
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCT
EST: gi|19053945|gb|BM732612.1|BM732612
EST:     CAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: CAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|193465757|gb|FK433362.1|FK433362
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCAT
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCAT
EST: gi|7690833|gb|AW758970.1|AW758970
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTTCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|207810509|gb|GD781618.1|GD781618
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTA
EST: gi|7926336|gb|AW832362.1|AW832362
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|20448949|gb|BQ253073.1|BQ253073
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7690957|gb|AW759092.1|AW759092
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|15000011|gb|BI320825.1|BI320825
EST:     ATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: ATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|9900710|gb|BE609678.1|BE609678
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|23053059|gb|BU577550.1|BU577550
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|5753079|gb|AI960366.1|AI960366
EST:     TTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|23057431|gb|BU578105.1|BU578105
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|26048112|gb|CA784701.1|CA784701
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|151395328|gb|EV265199.1|EV265199
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7285024|gb|AW597511.1|AW597511
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catactatactgactattgctctttcatattattattaaataactctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTAATTGTGTGTATACCACCTGCCGTAATT
                                           ctctttgt  CT-rich tract
              tattgctctttcatat  TA-rich tract