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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattattatttttttttcttttcttattcaacacacaaatacagtcattttatatgtaaaaagaatctgttttgaattagtaaaatggtctcttaattttagactttgctgctggcagaagttattaagtaatggaagtagtatagattttgttttggggtctcatgtaatggtttttaaatggaaatttgtagGTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTG

Basic information

species Glycine max
transcript GLYMA13G24090.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24090.2 (Glycine max), 3'ss of exon 7
lower sequence: AT2G34040.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgattattatttttttttcttttcttattcaacacacaaatacagtcattttatatgtaaaaagaatctgttttgaattagtaaaatggtctcttaattttagactttgctgctggcagaagttattaagtaatggaagtagt-atagattttgttttggggtctcatgtaatggtttttaaatggaaatttgtagGTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTG
                                                                                 ||| ||| || |   | | | ||  |     |   ||  || ||||      |||  | ||   ||  | | |||  |       |   ||||   | ||   |     ||   || | |||||| | || |||||||||||||||||||||||||| ||  |||| ||||| ||| | | |
---------------------------------------------------------------------------------gtataatagtttga-agtatcaggttg----gacagccaaatttat------atgagattatccatgtactgtgtggtattactcctgataataaatattgttt-----ttcccagTTTTCAGATACGGACCATATTGACAGGTTGATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCG

upper sequence: GLYMA13G24090.2 (Glycine max), 3'ss of exon 7
lower sequence: AT1G29030.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgattattatttttttttcttttcttattcaacacacaaatacagtcattttatatgtaaaaagaatctgttttgaattagtaaaatggtctcttaattttagactttgctgctggcagaagttattaagtaatggaagtagtatagattttgttttggggtctcatgtaatggtttttaaatggaaatttgt-agGTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTG
                                                                                          | |  | ||| || |  |||    |     || || | |||   |     |  |   ||||     ||  |  | ||  || || | || ||||   | |||   |||| |||||| ||||||||||||||||||| ||||||||||| || | ||| ||||||||  | |  
------------------------------------------------------------------------------------------tatggtgattgtaaaggttgaaatt---taaaattctgaaggtttcattttgat---gattcaaaattatg-ccacaactactgatgttcaaatattattttcccagGTTTCAGATACAGATCATATTGACAGGTTTATATCATGCCTGCAAACGGCCCTTCCATTCTTTGCA

upper sequence: GLYMA13G24090.2 (Glycine max), 3'ss of exon 7
lower sequence: AT1G23935.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgattattatttttttttcttttcttattcaacacacaaatacagtcattttatatgtaaaaagaatctgttttgaatt-agtaaaatggtctcttaattttagactttgctgctggcagaagttattaagtaatggaagtagtatagattttgttttggggtctcatgtaatggtttttaaatggaaatttgtagGTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTG
                                                         || |  |     |||   |   | |    | | || ||| || |  | || |   || |  | |||| | | |     | |  ||      ||  |  || ||  ||| ||   |||  | |||           ||||||| ||||||||| || || |||||||||| ||||||||||| |  |||||  |||||||  | | |
---------------------------------------------------------gtgagtatttcatgtgacgctctcaacctattagtttctgaactcaaaacgtca-tggtttctgaagctttca-----ttgttgtgccgccgaactacttctgatgtc-caccaaatattatttt-------ccctgtagGTTTCAGATGCACATTATGTTGACAGGTTTATATCATGCCTGCTAATGGCTGTTCCATTCTTTGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5752670|gb|AI959957.1|AI959957
EST:     AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAAT                         GTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCA
genomic: AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAATgtgattatta ... aaatttgtagGTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatagattttgttttggggtctcatgtaatggtttttaaatggaaatttgtagGTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTG
                                  tttttaaatggaaatt  TA-rich tract